miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11329 5' -47.4 NC_003084.1 + 69405 0.66 0.999101
Target:  5'- cCAGAAGGUUGUcgGCA-GAGUUGAuGUc -3'
miRNA:   3'- uGUUUUUCAACGa-CGUgCUCAGCU-CG- -5'
11329 5' -47.4 NC_003084.1 + 61179 0.66 0.998344
Target:  5'- cCGAAGAGUUGguggaCUGCAucgaucCGAGUacgaGAGCc -3'
miRNA:   3'- uGUUUUUCAAC-----GACGU------GCUCAg---CUCG- -5'
11329 5' -47.4 NC_003084.1 + 92221 0.66 0.998344
Target:  5'- -uGAAGGGUaaaagUGCACGAGUUGuGCg -3'
miRNA:   3'- ugUUUUUCAacg--ACGUGCUCAGCuCG- -5'
11329 5' -47.4 NC_003084.1 + 55913 0.66 0.998344
Target:  5'- gACAGGAAGgcGCUGgA--GGUgGAGCg -3'
miRNA:   3'- -UGUUUUUCaaCGACgUgcUCAgCUCG- -5'
11329 5' -47.4 NC_003084.1 + 59851 0.66 0.998344
Target:  5'- gGCGAGGAGguccgcgcGCUGCACucuAGcuaUCGAGCc -3'
miRNA:   3'- -UGUUUUUCaa------CGACGUGc--UC---AGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 39426 0.66 0.997993
Target:  5'- aGCAGcAAGcugcGCUGCuaggACGAGUuuaCGAGCg -3'
miRNA:   3'- -UGUUuUUCaa--CGACG----UGCUCA---GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 30346 0.66 0.997993
Target:  5'- gGCGAAgguGAGUUGCgguccGCcCGAGUUG-GCc -3'
miRNA:   3'- -UGUUU---UUCAACGa----CGuGCUCAGCuCG- -5'
11329 5' -47.4 NC_003084.1 + 33415 0.66 0.997993
Target:  5'- uGCGAAcGGUUG-UGCACacGUUGGGCa -3'
miRNA:   3'- -UGUUUuUCAACgACGUGcuCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 35327 0.66 0.997993
Target:  5'- ---uAGAGUUGCgcugaucccacUGCACGA--CGAGCa -3'
miRNA:   3'- uguuUUUCAACG-----------ACGUGCUcaGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 99337 0.67 0.997583
Target:  5'- uCAAcAGGUUGC-GCAUGAccucGUcCGAGCg -3'
miRNA:   3'- uGUUuUUCAACGaCGUGCU----CA-GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 38955 0.67 0.997583
Target:  5'- cGCGGGAAcggGCcGCACGAGcUCGGGg -3'
miRNA:   3'- -UGUUUUUcaaCGaCGUGCUC-AGCUCg -5'
11329 5' -47.4 NC_003084.1 + 89862 0.67 0.997583
Target:  5'- ----cAAGuUUGCUGUGCG-GUCGAGa -3'
miRNA:   3'- uguuuUUC-AACGACGUGCuCAGCUCg -5'
11329 5' -47.4 NC_003084.1 + 33472 0.67 0.997105
Target:  5'- uCAucGGGUUGUUGUuaauGUCGAGCg -3'
miRNA:   3'- uGUuuUUCAACGACGugcuCAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 91372 0.67 0.996552
Target:  5'- cGCAGcGAAGUUGCucaaUGUaACGGGgagCGGGCu -3'
miRNA:   3'- -UGUU-UUUCAACG----ACG-UGCUCa--GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 94651 0.67 0.996552
Target:  5'- uGCG--GAGgaGCUGCACucGGcCGAGCa -3'
miRNA:   3'- -UGUuuUUCaaCGACGUGc-UCaGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 12227 0.67 0.995775
Target:  5'- cCAucGAGUUGCUGCGaaucccaaccGUUGAGCu -3'
miRNA:   3'- uGUuuUUCAACGACGUgcu-------CAGCUCG- -5'
11329 5' -47.4 NC_003084.1 + 92657 0.67 0.995182
Target:  5'- aACGAAAuaugGGUUaGCUGCAgGAGUauaGuGCu -3'
miRNA:   3'- -UGUUUU----UCAA-CGACGUgCUCAg--CuCG- -5'
11329 5' -47.4 NC_003084.1 + 101682 0.68 0.994347
Target:  5'- cCAGAAAac-GgUGCACGAGUUGAuGCg -3'
miRNA:   3'- uGUUUUUcaaCgACGUGCUCAGCU-CG- -5'
11329 5' -47.4 NC_003084.1 + 33889 0.68 0.994347
Target:  5'- uGCAGucAAAGUuuUGCUGCcuaacggugcccACGAGUaUGGGCu -3'
miRNA:   3'- -UGUU--UUUCA--ACGACG------------UGCUCA-GCUCG- -5'
11329 5' -47.4 NC_003084.1 + 38460 0.68 0.992328
Target:  5'- cCGGGAAGUUG--GC-CGGGUUGAGCc -3'
miRNA:   3'- uGUUUUUCAACgaCGuGCUCAGCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.