miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11335 3' -53.2 NC_003084.1 + 105639 0.66 0.921568
Target:  5'- ---uUUAGCAUCACCAGu--CGGCCg -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcuGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 104677 0.66 0.921568
Target:  5'- ------uGCACCACCAGCGcCGaGUUCa -3'
miRNA:   3'- uuacaauCGUGGUGGUUGCuGC-CGGG- -5'
11335 3' -53.2 NC_003084.1 + 102997 0.66 0.921568
Target:  5'- cAAUGUgAGCACCgacagcACCAaaaACGuuguccaGGCCCa -3'
miRNA:   3'- -UUACAaUCGUGG------UGGU---UGCug-----CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 102200 0.67 0.881909
Target:  5'- -----cGGCACCACCGugGACacacgcuauggGGCUa -3'
miRNA:   3'- uuacaaUCGUGGUGGUugCUG-----------CCGGg -5'
11335 3' -53.2 NC_003084.1 + 97748 0.66 0.932705
Target:  5'- ------cGCACCGCgGAUaACGGUCCa -3'
miRNA:   3'- uuacaauCGUGGUGgUUGcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 96502 0.66 0.927268
Target:  5'- ----cUAGCGCCACgAACGcucGCCCa -3'
miRNA:   3'- uuacaAUCGUGGUGgUUGCugcCGGG- -5'
11335 3' -53.2 NC_003084.1 + 95351 0.68 0.866689
Target:  5'- -----gAGCACCACUg--GACGGCCg -3'
miRNA:   3'- uuacaaUCGUGGUGGuugCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 95103 0.67 0.909379
Target:  5'- uGGUGUgcacGGCuuugGCUACCuguACGGCGGCUg -3'
miRNA:   3'- -UUACAa---UCG----UGGUGGu--UGCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 93986 0.68 0.836988
Target:  5'- --aGUUGGCACCAUCuugugccgcagucCGGCGGUCg -3'
miRNA:   3'- uuaCAAUCGUGGUGGuu-----------GCUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 93838 0.69 0.806492
Target:  5'- ----aUAGUGCCGCuCAACuuGACGGCCa -3'
miRNA:   3'- uuacaAUCGUGGUG-GUUG--CUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 91233 0.67 0.896151
Target:  5'- -----aAGCACggaCACCAACGuguGGCCCu -3'
miRNA:   3'- uuacaaUCGUG---GUGGUUGCug-CCGGG- -5'
11335 3' -53.2 NC_003084.1 + 90608 0.69 0.815687
Target:  5'- -uUG-UAGCACCG--GACGAUGGCUCu -3'
miRNA:   3'- uuACaAUCGUGGUggUUGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 88777 0.66 0.927268
Target:  5'- --aGUUccaAGCACCACCG-C-AUGGCCg -3'
miRNA:   3'- uuaCAA---UCGUGGUGGUuGcUGCCGGg -5'
11335 3' -53.2 NC_003084.1 + 82189 0.69 0.797123
Target:  5'- ---aUUAGCACCGCCAA--ACGGUUCu -3'
miRNA:   3'- uuacAAUCGUGGUGGUUgcUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 77990 0.68 0.848875
Target:  5'- cAAUGUUgagAGUACCGguCCAACGcuuuuggguaacCGGCCCg -3'
miRNA:   3'- -UUACAA---UCGUGGU--GGUUGCu-----------GCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 77228 0.75 0.455764
Target:  5'- -uUGUUGGgGaaGCCAgcACGGCGGCCCu -3'
miRNA:   3'- uuACAAUCgUggUGGU--UGCUGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 75443 0.66 0.937878
Target:  5'- aAAUGUUGGguCCACUAGagUGGgGGCgCa -3'
miRNA:   3'- -UUACAAUCguGGUGGUU--GCUgCCGgG- -5'
11335 3' -53.2 NC_003084.1 + 75319 0.67 0.889155
Target:  5'- gGGUGUUGcccgcGUACaugGCCAACGugGGCUUc -3'
miRNA:   3'- -UUACAAU-----CGUGg--UGGUUGCugCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 71974 0.7 0.737817
Target:  5'- --aGgcGGCGCuCACCAACGuCGGUUCu -3'
miRNA:   3'- uuaCaaUCGUG-GUGGUUGCuGCCGGG- -5'
11335 3' -53.2 NC_003084.1 + 68811 0.73 0.578432
Target:  5'- ----cUAGCACCACCGuuauCGGCCCc -3'
miRNA:   3'- uuacaAUCGUGGUGGUugcuGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.