miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11336 3' -54.2 NC_003084.1 + 107037 0.66 0.867219
Target:  5'- --aGC-AGCACCACUggUUGCucaacugcaccgcagGGCCUa -3'
miRNA:   3'- uuaCGaUCGUGGUGGuuGAUG---------------CCGGG- -5'
11336 3' -54.2 NC_003084.1 + 105480 0.67 0.821654
Target:  5'- --cGCgaauuGuCACCGCaCGACUugGGCuCCa -3'
miRNA:   3'- uuaCGau---C-GUGGUG-GUUGAugCCG-GG- -5'
11336 3' -54.2 NC_003084.1 + 104762 0.66 0.871882
Target:  5'- --aGCagcGCACCACCAcaucCUcCGGUCCa -3'
miRNA:   3'- uuaCGau-CGUGGUGGUu---GAuGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 104674 0.68 0.774501
Target:  5'- --cGCU-GCACCACCAGCgcCGaGUUCa -3'
miRNA:   3'- uuaCGAuCGUGGUGGUUGauGC-CGGG- -5'
11336 3' -54.2 NC_003084.1 + 99378 0.66 0.864063
Target:  5'- --gGCc-GCAUCACCAAgUGgGGCUCg -3'
miRNA:   3'- uuaCGauCGUGGUGGUUgAUgCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 97763 0.69 0.74444
Target:  5'- --cGCUAcgguccacaucGCACCGCgGAUaACGGUCCa -3'
miRNA:   3'- uuaCGAU-----------CGUGGUGgUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 97220 0.66 0.89389
Target:  5'- -cUGCUcGGcCAUCACCAAau-CGGCCa -3'
miRNA:   3'- uuACGA-UC-GUGGUGGUUgauGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 96500 0.74 0.461672
Target:  5'- --aGCUAGCGCCACgAACgcucGCCCa -3'
miRNA:   3'- uuaCGAUCGUGGUGgUUGaugcCGGG- -5'
11336 3' -54.2 NC_003084.1 + 95343 0.67 0.856013
Target:  5'- --cGCgcacggAGCACCACUGG--ACGGCCg -3'
miRNA:   3'- uuaCGa-----UCGUGGUGGUUgaUGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 93843 0.69 0.754583
Target:  5'- --gGCgaaUAGUGCCGCuCAACUugACGGCCa -3'
miRNA:   3'- uuaCG---AUCGUGGUG-GUUGA--UGCCGGg -5'
11336 3' -54.2 NC_003084.1 + 93837 0.66 0.886801
Target:  5'- --cGUagAGCgACCGCCgGACUGCGGCa- -3'
miRNA:   3'- uuaCGa-UCG-UGGUGG-UUGAUGCCGgg -5'
11336 3' -54.2 NC_003084.1 + 91207 0.69 0.764607
Target:  5'- cGGUGC-AGCuau-CCAACcACGGCCCg -3'
miRNA:   3'- -UUACGaUCGugguGGUUGaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 88724 0.67 0.830552
Target:  5'- --cGCUgaAGC-CCAUCAagaugACUAUGGCCUc -3'
miRNA:   3'- uuaCGA--UCGuGGUGGU-----UGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 86491 0.68 0.783285
Target:  5'- cAAUGU--GCAUCACCAcccggaguauguuAUUGCGGUCCg -3'
miRNA:   3'- -UUACGauCGUGGUGGU-------------UGAUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 82201 0.7 0.660279
Target:  5'- cGGUGCaucaaaauUAGCACCGCCAA--ACGGUUCu -3'
miRNA:   3'- -UUACG--------AUCGUGGUGGUUgaUGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 77228 0.7 0.670994
Target:  5'- -uUGUUGGgGaaGCCAGCacgGCGGCCCu -3'
miRNA:   3'- uuACGAUCgUggUGGUUGa--UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 75430 0.68 0.774501
Target:  5'- -uUGUgAGCACCACaaAugUugGGUCCa -3'
miRNA:   3'- uuACGaUCGUGGUGg-UugAugCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 69962 0.66 0.879463
Target:  5'- cGUGCUGGCGCgCACguaaAACUgguuaggaccgAUGGUCCu -3'
miRNA:   3'- uUACGAUCGUG-GUGg---UUGA-----------UGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68809 0.84 0.119796
Target:  5'- --aGCUAGCACCACCGuuauCGGCCCc -3'
miRNA:   3'- uuaCGAUCGUGGUGGUugauGCCGGG- -5'
11336 3' -54.2 NC_003084.1 + 68737 0.72 0.553273
Target:  5'- uGUGUUAGCACgACCGAC-ACcgGGUCCa -3'
miRNA:   3'- uUACGAUCGUGgUGGUUGaUG--CCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.