miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11337 5' -47.3 NC_003084.1 + 49681 1.11 0.00946
Target:  5'- cUAAAGCUAAAUGUUGGCACCACCACCc -3'
miRNA:   3'- -AUUUCGAUUUACAACCGUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 49775 0.68 0.991085
Target:  5'- --uAGCUAAAg--UGaGCACCACUGCg -3'
miRNA:   3'- auuUCGAUUUacaAC-CGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 46743 0.68 0.992306
Target:  5'- aAAAGUUGGAUGaagucGGUGCCccgguCCACCg -3'
miRNA:   3'- aUUUCGAUUUACaa---CCGUGGu----GGUGG- -5'
11337 5' -47.3 NC_003084.1 + 2223 0.66 0.998368
Target:  5'- cGGGGCUGuuGGUGcUGGaCACCuCgGCCa -3'
miRNA:   3'- aUUUCGAU--UUACaACC-GUGGuGgUGG- -5'
11337 5' -47.3 NC_003084.1 + 10039 0.72 0.91588
Target:  5'- cGAGGUUGGcgGUgUGGUuCCGCUACCg -3'
miRNA:   3'- aUUUCGAUUuaCA-ACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 18604 0.72 0.928097
Target:  5'- --cAGCuUGGcgGUUcGGCaaaACCACCACCg -3'
miRNA:   3'- auuUCG-AUUuaCAA-CCG---UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 49429 0.69 0.980262
Target:  5'- -cAAGCaacuuUAAAUGUUaGCACCACCAaCUa -3'
miRNA:   3'- auUUCG-----AUUUACAAcCGUGGUGGU-GG- -5'
11337 5' -47.3 NC_003084.1 + 49260 0.69 0.980262
Target:  5'- -cAAGCaacuuUAAAUGUUaGCACCACCAaCUa -3'
miRNA:   3'- auUUCG-----AUUUACAAcCGUGGUGGU-GG- -5'
11337 5' -47.3 NC_003084.1 + 42971 0.69 0.98461
Target:  5'- uUAAGGUgcGAUuuUUGGacaCACCACCACCa -3'
miRNA:   3'- -AUUUCGauUUAc-AACC---GUGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 89376 0.68 0.990555
Target:  5'- uUGAAGCUGGuuucgccggGGUGCCACUugCg -3'
miRNA:   3'- -AUUUCGAUUuacaa----CCGUGGUGGugG- -5'
11337 5' -47.3 NC_003084.1 + 36277 0.69 0.986489
Target:  5'- uUAGGGCcAAAUcgUGGC-CCGCUGCCg -3'
miRNA:   3'- -AUUUCGaUUUAcaACCGuGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 40318 0.69 0.984411
Target:  5'- -uGGGCUGGguagcgcAUGaUGaGCACgGCCACCa -3'
miRNA:   3'- auUUCGAUU-------UACaAC-CGUGgUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 31956 0.75 0.819498
Target:  5'- ---uGCcGGAcucgGUUGGCACCACCGCg -3'
miRNA:   3'- auuuCGaUUUa---CAACCGUGGUGGUGg -5'
11337 5' -47.3 NC_003084.1 + 53344 0.68 0.988188
Target:  5'- aAAGGUccaaUAGcgGUUGGCAaacuCCuCCACCa -3'
miRNA:   3'- aUUUCG----AUUuaCAACCGU----GGuGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 107399 0.75 0.828889
Target:  5'- cGAAGCUGAAca-UGGCACUgcagcgagcuACCACCg -3'
miRNA:   3'- aUUUCGAUUUacaACCGUGG----------UGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 106264 0.69 0.981876
Target:  5'- aUGGAGCUGGGUucagcuacccgacgGUUGGCAacCCGaCACCg -3'
miRNA:   3'- -AUUUCGAUUUA--------------CAACCGU--GGUgGUGG- -5'
11337 5' -47.3 NC_003084.1 + 52673 0.68 0.988188
Target:  5'- -cGAGCUAuacAAUGgagGGUucgggugcauACCACUACCa -3'
miRNA:   3'- auUUCGAU---UUACaa-CCG----------UGGUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 31876 0.68 0.991085
Target:  5'- cAGAGC-AAGU-UUGGCGauagCACCACCg -3'
miRNA:   3'- aUUUCGaUUUAcAACCGUg---GUGGUGG- -5'
11337 5' -47.3 NC_003084.1 + 63282 0.74 0.864172
Target:  5'- aUAAAGCc--GUGUcGGCACCACCgugagcACCa -3'
miRNA:   3'- -AUUUCGauuUACAaCCGUGGUGG------UGG- -5'
11337 5' -47.3 NC_003084.1 + 13705 0.69 0.980262
Target:  5'- gAGGGUccAGAUGUUaGCGgCACCGCCg -3'
miRNA:   3'- aUUUCGa-UUUACAAcCGUgGUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.