miRNA display CGI


Results 1 - 20 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11359 3' -49.9 NC_003084.1 + 47305 0.66 0.991016
Target:  5'- gGCugCgGCCGGUGaGUUuAGGUg--GCg -3'
miRNA:   3'- aCGugG-UGGCCAC-CAAuUUCAacaCG- -5'
11359 3' -49.9 NC_003084.1 + 28408 0.66 0.991016
Target:  5'- -aUACCcgugauCCGGUGGU---GGUUGUGg -3'
miRNA:   3'- acGUGGu-----GGCCACCAauuUCAACACg -5'
11359 3' -49.9 NC_003084.1 + 70371 0.66 0.989684
Target:  5'- cGCAUgagUACCGGcGGUU--GGcUGUGCu -3'
miRNA:   3'- aCGUG---GUGGCCaCCAAuuUCaACACG- -5'
11359 3' -49.9 NC_003084.1 + 58244 0.66 0.989684
Target:  5'- cUGCACCACga--GGUUGAAGggaagaGUGCu -3'
miRNA:   3'- -ACGUGGUGgccaCCAAUUUCaa----CACG- -5'
11359 3' -49.9 NC_003084.1 + 48787 0.66 0.988201
Target:  5'- ---uCCACCGGUcGUccaccAAGUUGUGCu -3'
miRNA:   3'- acguGGUGGCCAcCAau---UUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 94309 0.66 0.988201
Target:  5'- cGUAgCACCGGagGGUUG----UGUGCc -3'
miRNA:   3'- aCGUgGUGGCCa-CCAAUuucaACACG- -5'
11359 3' -49.9 NC_003084.1 + 96827 0.66 0.984746
Target:  5'- uUGCugCACauGUGGUUGcaccugcGGUUGUuGCu -3'
miRNA:   3'- -ACGugGUGgcCACCAAUu------UCAACA-CG- -5'
11359 3' -49.9 NC_003084.1 + 18460 0.66 0.984746
Target:  5'- gGC-CCGCaCGGUGGU---GGUUuUGCc -3'
miRNA:   3'- aCGuGGUG-GCCACCAauuUCAAcACG- -5'
11359 3' -49.9 NC_003084.1 + 78224 0.66 0.984746
Target:  5'- aGCuCCACCGcgaaacgcagucGUGGUUccGGUuguugUGUGCg -3'
miRNA:   3'- aCGuGGUGGC------------CACCAAuuUCA-----ACACG- -5'
11359 3' -49.9 NC_003084.1 + 52609 0.66 0.984746
Target:  5'- gGCAUCGCCuucGGUGGUgacucAAGG-UGUGa -3'
miRNA:   3'- aCGUGGUGG---CCACCAa----UUUCaACACg -5'
11359 3' -49.9 NC_003084.1 + 42464 0.66 0.984746
Target:  5'- gGCACgACCGGUGcucgcGGUUaUGCg -3'
miRNA:   3'- aCGUGgUGGCCACcaauuUCAAcACG- -5'
11359 3' -49.9 NC_003084.1 + 49143 0.67 0.983572
Target:  5'- gGUACCcgAUCGGUGGUgugugacaaaUUGUGCu -3'
miRNA:   3'- aCGUGG--UGGCCACCAauuuc-----AACACG- -5'
11359 3' -49.9 NC_003084.1 + 46442 0.67 0.982753
Target:  5'- gGUacaACCACCGGUGGgcgguAAGUUuuaGCu -3'
miRNA:   3'- aCG---UGGUGGCCACCaau--UUCAAca-CG- -5'
11359 3' -49.9 NC_003084.1 + 6409 0.67 0.982332
Target:  5'- aGCuCCACCGGUGcacccuccAGUcGUGCu -3'
miRNA:   3'- aCGuGGUGGCCACcaauu---UCAaCACG- -5'
11359 3' -49.9 NC_003084.1 + 651 0.67 0.98057
Target:  5'- cGCACCAUUGc-GGUUccauccucGGUUGUGCg -3'
miRNA:   3'- aCGUGGUGGCcaCCAAuu------UCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 99375 0.67 0.98057
Target:  5'- cGCAUCACCaaGUGGggcucgUAAAGUUG-GUc -3'
miRNA:   3'- aCGUGGUGGc-CACCa-----AUUUCAACaCG- -5'
11359 3' -49.9 NC_003084.1 + 12406 0.67 0.98057
Target:  5'- cGCACCACUGc------AAGUUGUGCa -3'
miRNA:   3'- aCGUGGUGGCcaccaauUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 83672 0.67 0.98057
Target:  5'- aUGCAUCcgaaCGGg---UAAAGUUGUGCg -3'
miRNA:   3'- -ACGUGGug--GCCaccaAUUUCAACACG- -5'
11359 3' -49.9 NC_003084.1 + 65962 0.67 0.980109
Target:  5'- gUGCACCuuCCaGUGGUgggaaacgcuAGUggGUGCa -3'
miRNA:   3'- -ACGUGGu-GGcCACCAauu-------UCAa-CACG- -5'
11359 3' -49.9 NC_003084.1 + 33370 0.67 0.978186
Target:  5'- cGCACuCcCCGGUGag-GAAGUUGgGCc -3'
miRNA:   3'- aCGUG-GuGGCCACcaaUUUCAACaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.