Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 30280 | 0.66 | 0.655541 |
Target: 5'- gGugCACCGCaUCCGGcCUCaucCCACCGa -3' miRNA: 3'- -UugGUGGUGgAGGUC-GAGgu-GGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 17477 | 0.66 | 0.655541 |
Target: 5'- uGAgCGCCGggUCCAGCUCCuCCAUUAu -3' miRNA: 3'- -UUgGUGGUggAGGUCGAGGuGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 21543 | 0.66 | 0.645149 |
Target: 5'- uAACUAUCACC-CCAaa-CCACCACCGc -3' miRNA: 3'- -UUGGUGGUGGaGGUcgaGGUGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 96725 | 0.66 | 0.645149 |
Target: 5'- ---gACCACCcUCGGUUCCacaACCACCAc -3' miRNA: 3'- uuggUGGUGGaGGUCGAGG---UGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 25480 | 0.66 | 0.634747 |
Target: 5'- uACCAaCGCa-CCGGC-CCGCCACCGu -3' miRNA: 3'- uUGGUgGUGgaGGUCGaGGUGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 70106 | 0.66 | 0.634747 |
Target: 5'- cACCACCaACCU-CAGCUCC-UCGCUc -3' miRNA: 3'- uUGGUGG-UGGAgGUCGAGGuGGUGGu -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 96004 | 0.66 | 0.634747 |
Target: 5'- cACCAgUAUgUCCAGCUCC-UUGCCAg -3' miRNA: 3'- uUGGUgGUGgAGGUCGAGGuGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 87724 | 0.66 | 0.624343 |
Target: 5'- --gCACCA-CUCUAGCUCCAauucuaccCCGCCu -3' miRNA: 3'- uugGUGGUgGAGGUCGAGGU--------GGUGGu -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 68649 | 0.66 | 0.624342 |
Target: 5'- cGCaUACCACCUCUAGC-CCGacucgugcCCACCc -3' miRNA: 3'- uUG-GUGGUGGAGGUCGaGGU--------GGUGGu -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 31941 | 0.66 | 0.613944 |
Target: 5'- --gCACCACCgCgGGCUCgGCCGCa- -3' miRNA: 3'- uugGUGGUGGaGgUCGAGgUGGUGgu -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 96446 | 0.66 | 0.613944 |
Target: 5'- cGCCACCACCaUCGGUaCCAUUugCGa -3' miRNA: 3'- uUGGUGGUGGaGGUCGaGGUGGugGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 45693 | 0.67 | 0.607711 |
Target: 5'- cACCACCgaguaagcgccauuaACCUCCAGUUCCuCCGg-- -3' miRNA: 3'- uUGGUGG---------------UGGAGGUCGAGGuGGUggu -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 15785 | 0.67 | 0.59734 |
Target: 5'- cGCgCAgCACgUCCggcauuuugguguacAGCUCCACCGCUAg -3' miRNA: 3'- uUG-GUgGUGgAGG---------------UCGAGGUGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 51618 | 0.67 | 0.593197 |
Target: 5'- -uCCAuauCCugCUCCAuauuccGCUCCucgACCACCAg -3' miRNA: 3'- uuGGU---GGugGAGGU------CGAGG---UGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 15307 | 0.67 | 0.593197 |
Target: 5'- cAACCACCGCCacCCuGUUCgCAagcuuCCACCAg -3' miRNA: 3'- -UUGGUGGUGGa-GGuCGAG-GU-----GGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 94582 | 0.67 | 0.593197 |
Target: 5'- cGACCAaaaCGCgCUCCA-CUCgUACCACCAg -3' miRNA: 3'- -UUGGUg--GUG-GAGGUcGAG-GUGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 43482 | 0.67 | 0.582865 |
Target: 5'- cGCCGCCACCaaguguacCCAGUaa-GCCGCCAg -3' miRNA: 3'- uUGGUGGUGGa-------GGUCGaggUGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 85767 | 0.67 | 0.562316 |
Target: 5'- gGACCGCaaaGCCUCaauuucacGCcuggCCACCGCCAa -3' miRNA: 3'- -UUGGUGg--UGGAGgu------CGa---GGUGGUGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 42284 | 0.67 | 0.552113 |
Target: 5'- gGACCACUACaacgcCCAGUUCgGCC-CCAa -3' miRNA: 3'- -UUGGUGGUGga---GGUCGAGgUGGuGGU- -5' |
|||||||
11360 | 5' | -59.4 | NC_003084.1 | + | 104682 | 0.67 | 0.548048 |
Target: 5'- cACCAgCGCCgagUUCAGCUCCucggauacacgcuCCACCAu -3' miRNA: 3'- uUGGUgGUGG---AGGUCGAGGu------------GGUGGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home