miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11360 5' -59.4 NC_003084.1 + 54536 0.75 0.191498
Target:  5'- -cCCACCACC-CCAGCUCCAaguCCAg -3'
miRNA:   3'- uuGGUGGUGGaGGUCGAGGUgguGGU- -5'
11360 5' -59.4 NC_003084.1 + 87724 0.66 0.624343
Target:  5'- --gCACCA-CUCUAGCUCCAauucuaccCCGCCu -3'
miRNA:   3'- uugGUGGUgGAGGUCGAGGU--------GGUGGu -5'
11360 5' -59.4 NC_003084.1 + 96004 0.66 0.634747
Target:  5'- cACCAgUAUgUCCAGCUCC-UUGCCAg -3'
miRNA:   3'- uUGGUgGUGgAGGUCGAGGuGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 17477 0.66 0.655541
Target:  5'- uGAgCGCCGggUCCAGCUCCuCCAUUAu -3'
miRNA:   3'- -UUgGUGGUggAGGUCGAGGuGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 54485 0.72 0.327023
Target:  5'- cACCAcuCCACCUCCGGgUCgACC-CCAu -3'
miRNA:   3'- uUGGU--GGUGGAGGUCgAGgUGGuGGU- -5'
11360 5' -59.4 NC_003084.1 + 50788 0.71 0.374556
Target:  5'- cACCAUUugCUgCAGCUaCUGCCACCGa -3'
miRNA:   3'- uUGGUGGugGAgGUCGA-GGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 18586 0.69 0.444815
Target:  5'- aAACCACCACCgugcgggCCAuCUCUGCuCACCu -3'
miRNA:   3'- -UUGGUGGUGGa------GGUcGAGGUG-GUGGu -5'
11360 5' -59.4 NC_003084.1 + 35360 0.69 0.463507
Target:  5'- uGCUACCACCUCgCGG-UCCACCcugaGCCc -3'
miRNA:   3'- uUGGUGGUGGAG-GUCgAGGUGG----UGGu -5'
11360 5' -59.4 NC_003084.1 + 10157 0.68 0.541968
Target:  5'- cAGCgGCCuuUUUCAGCUCCugUGCCAu -3'
miRNA:   3'- -UUGgUGGugGAGGUCGAGGugGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 31941 0.66 0.613944
Target:  5'- --gCACCACCgCgGGCUCgGCCGCa- -3'
miRNA:   3'- uugGUGGUGGaGgUCGAGgUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 94582 0.67 0.593197
Target:  5'- cGACCAaaaCGCgCUCCA-CUCgUACCACCAg -3'
miRNA:   3'- -UUGGUg--GUG-GAGGUcGAG-GUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 51294 0.68 0.531885
Target:  5'- gGAgCACCA-CUCCAGCUC-ACCACa- -3'
miRNA:   3'- -UUgGUGGUgGAGGUCGAGgUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 97215 0.73 0.284109
Target:  5'- cGGCCAUCACCaaaucggCCAGCUCgGCCaACCu -3'
miRNA:   3'- -UUGGUGGUGGa------GGUCGAGgUGG-UGGu -5'
11360 5' -59.4 NC_003084.1 + 15307 0.67 0.593197
Target:  5'- cAACCACCGCCacCCuGUUCgCAagcuuCCACCAg -3'
miRNA:   3'- -UUGGUGGUGGa-GGuCGAG-GU-----GGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 49664 0.72 0.304987
Target:  5'- cACCACCACC-CCAGCU-CACCGgUAc -3'
miRNA:   3'- uUGGUGGUGGaGGUCGAgGUGGUgGU- -5'
11360 5' -59.4 NC_003084.1 + 51416 0.68 0.531885
Target:  5'- gGAgCACCA-CUCCAGCUC-ACCACa- -3'
miRNA:   3'- -UUgGUGGUgGAGGUCGAGgUGGUGgu -5'
11360 5' -59.4 NC_003084.1 + 15785 0.67 0.59734
Target:  5'- cGCgCAgCACgUCCggcauuuugguguacAGCUCCACCGCUAg -3'
miRNA:   3'- uUG-GUgGUGgAGG---------------UCGAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 25480 0.66 0.634747
Target:  5'- uACCAaCGCa-CCGGC-CCGCCACCGu -3'
miRNA:   3'- uUGGUgGUGgaGGUCGaGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 46864 0.72 0.312203
Target:  5'- uGCgGgCACgUUCGGUUCCACCACCAc -3'
miRNA:   3'- uUGgUgGUGgAGGUCGAGGUGGUGGU- -5'
11360 5' -59.4 NC_003084.1 + 26379 0.71 0.374556
Target:  5'- gGGCCAUCAUCUCgGccauaucgggccGCUUCGCCACCGu -3'
miRNA:   3'- -UUGGUGGUGGAGgU------------CGAGGUGGUGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.