Results 21 - 40 of 85 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11403 | 3' | -58.1 | NC_003085.1 | + | 26204 | 0.67 | 0.462505 |
Target: 5'- aGCUgCGCCUugUGCGCgggCGgcgcggugcgaagcGCGGCgGCCg -3' miRNA: 3'- -CGA-GCGGG--ACGUGaa-GC--------------UGCCGgUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 26930 | 0.67 | 0.473369 |
Target: 5'- cGUUgGCCUgcauguaccgcgGCGCUUCGuGCGGCUuCCg -3' miRNA: 3'- -CGAgCGGGa-----------CGUGAAGC-UGCCGGuGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 45878 | 0.66 | 0.515964 |
Target: 5'- aGUUCGCcgCCUcggcagcgaggcGCGCUUgCGccCGGCCGCCu -3' miRNA: 3'- -CGAGCG--GGA------------CGUGAA-GCu-GCCGGUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 27864 | 0.66 | 0.547311 |
Target: 5'- cGCUCGCgCCacGCAUgaUGuCGGCCAUg -3' miRNA: 3'- -CGAGCG-GGa-CGUGaaGCuGCCGGUGg -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 5849 | 0.7 | 0.316028 |
Target: 5'- uGCcCGCUCUGCACUcggGAUGGCagCGCCu -3' miRNA: 3'- -CGaGCGGGACGUGAag-CUGCCG--GUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 34254 | 0.68 | 0.408436 |
Target: 5'- cCUCGCCCacuuccgcgGCGCggCGcUGGCgCACCg -3' miRNA: 3'- cGAGCGGGa--------CGUGaaGCuGCCG-GUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 26737 | 0.67 | 0.495473 |
Target: 5'- ---aGCCgaGUGCUucUCGGCaGCCGCCg -3' miRNA: 3'- cgagCGGgaCGUGA--AGCUGcCGGUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 37266 | 0.66 | 0.557897 |
Target: 5'- aGUUCGCCgggaaGCGC-UCGACGucgcCCACCu -3' miRNA: 3'- -CGAGCGGga---CGUGaAGCUGCc---GGUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 19433 | 0.68 | 0.417636 |
Target: 5'- uGCUgGCCCUGgaagcCGCggaCGACgucgccaaGGCCGCCc -3' miRNA: 3'- -CGAgCGGGAC-----GUGaa-GCUG--------CCGGUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 40537 | 0.66 | 0.568541 |
Target: 5'- --aCGCgCUGCACUUCGGaGGCguCg -3' miRNA: 3'- cgaGCGgGACGUGAAGCUgCCGguGg -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 21901 | 0.67 | 0.485366 |
Target: 5'- --gUGCCCUGCcagAUggCGACGucaccGCCGCCg -3' miRNA: 3'- cgaGCGGGACG---UGaaGCUGC-----CGGUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 41316 | 0.67 | 0.455659 |
Target: 5'- cGUUCGCCUgaUGCGCggcgcUUGAgcaGGuCCACCa -3' miRNA: 3'- -CGAGCGGG--ACGUGa----AGCUg--CC-GGUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 28042 | 0.67 | 0.505674 |
Target: 5'- aGgUCGUUCUGCGCggccUCGGacagcaGGCgGCCg -3' miRNA: 3'- -CgAGCGGGACGUGa---AGCUg-----CCGgUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 31140 | 0.66 | 0.515964 |
Target: 5'- cGCgUUGCggCUGCcCUUCgGACGGCCAgCg -3' miRNA: 3'- -CG-AGCGg-GACGuGAAG-CUGCCGGUgG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 27207 | 0.66 | 0.536789 |
Target: 5'- aCUCGgCCUGCugccgcucCUUCGucucguUGGCCugCg -3' miRNA: 3'- cGAGCgGGACGu-------GAAGCu-----GCCGGugG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 40979 | 0.66 | 0.547311 |
Target: 5'- gGCggGCCa-GCGCcUCGGCGGCCuuCu -3' miRNA: 3'- -CGagCGGgaCGUGaAGCUGCCGGugG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 25558 | 0.74 | 0.17558 |
Target: 5'- uGCUCGCgacuuUCUGCGCgUgGACGGCUGCUg -3' miRNA: 3'- -CGAGCG-----GGACGUGaAgCUGCCGGUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 28589 | 0.71 | 0.293725 |
Target: 5'- cGUaUGCCUUGCGCUggGugGGCggCACCg -3' miRNA: 3'- -CGaGCGGGACGUGAagCugCCG--GUGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 8873 | 0.69 | 0.36439 |
Target: 5'- cCUCGCCCggucggcaaugcUGCACUUgGgguccaccGCGGCCgucACCg -3' miRNA: 3'- cGAGCGGG------------ACGUGAAgC--------UGCCGG---UGG- -5' |
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11403 | 3' | -58.1 | NC_003085.1 | + | 12040 | 0.69 | 0.399363 |
Target: 5'- cGCUCGCUagccGCACUggCGcauCGGUCACUa -3' miRNA: 3'- -CGAGCGGga--CGUGAa-GCu--GCCGGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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