miRNA display CGI


Results 1 - 20 of 85 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11403 3' -58.1 NC_003085.1 + 11280 0.66 0.572813
Target:  5'- uGC-CGCcagcccaggggaacaCCUGCGCcgCGGCGgggagcGCCACCa -3'
miRNA:   3'- -CGaGCG---------------GGACGUGaaGCUGC------CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 26737 0.67 0.495473
Target:  5'- ---aGCCgaGUGCUucUCGGCaGCCGCCg -3'
miRNA:   3'- cgagCGGgaCGUGA--AGCUGcCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 26930 0.67 0.473369
Target:  5'- cGUUgGCCUgcauguaccgcgGCGCUUCGuGCGGCUuCCg -3'
miRNA:   3'- -CGAgCGGGa-----------CGUGAAGC-UGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 48900 1.03 0.001298
Target:  5'- gGC-CGCCCUGCACUUCGACGGCCACCc -3'
miRNA:   3'- -CGaGCGGGACGUGAAGCUGCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40979 0.66 0.547311
Target:  5'- gGCggGCCa-GCGCcUCGGCGGCCuuCu -3'
miRNA:   3'- -CGagCGGgaCGUGaAGCUGCCGGugG- -5'
11403 3' -58.1 NC_003085.1 + 8787 0.66 0.547311
Target:  5'- -gUCcCCCUGCGC--CGGCGGCU-CCg -3'
miRNA:   3'- cgAGcGGGACGUGaaGCUGCCGGuGG- -5'
11403 3' -58.1 NC_003085.1 + 27207 0.66 0.536789
Target:  5'- aCUCGgCCUGCugccgcucCUUCGucucguUGGCCugCg -3'
miRNA:   3'- cGAGCgGGACGu-------GAAGCu-----GCCGGugG- -5'
11403 3' -58.1 NC_003085.1 + 35688 0.66 0.526338
Target:  5'- cGCUCGCCUUGaaCGCcgaccagugUUCGuccaACGGCCucCCg -3'
miRNA:   3'- -CGAGCGGGAC--GUG---------AAGC----UGCCGGu-GG- -5'
11403 3' -58.1 NC_003085.1 + 31140 0.66 0.515964
Target:  5'- cGCgUUGCggCUGCcCUUCgGACGGCCAgCg -3'
miRNA:   3'- -CG-AGCGg-GACGuGAAG-CUGCCGGUgG- -5'
11403 3' -58.1 NC_003085.1 + 37921 0.67 0.495473
Target:  5'- cGCagGCCCcgGCGC-UCGACGaacgcGCgGCCg -3'
miRNA:   3'- -CGagCGGGa-CGUGaAGCUGC-----CGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 46483 0.67 0.505674
Target:  5'- gGUUC-CCaCUGCGCgcUCGACGaaaCCACCg -3'
miRNA:   3'- -CGAGcGG-GACGUGa-AGCUGCc--GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 45878 0.66 0.515964
Target:  5'- aGUUCGCcgCCUcggcagcgaggcGCGCUUgCGccCGGCCGCCu -3'
miRNA:   3'- -CGAGCG--GGA------------CGUGAA-GCu-GCCGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 40537 0.66 0.568541
Target:  5'- --aCGCgCUGCACUUCGGaGGCguCg -3'
miRNA:   3'- cgaGCGgGACGUGAAGCUgCCGguGg -5'
11403 3' -58.1 NC_003085.1 + 28042 0.67 0.505674
Target:  5'- aGgUCGUUCUGCGCggccUCGGacagcaGGCgGCCg -3'
miRNA:   3'- -CgAGCGGGACGUGa---AGCUg-----CCGgUGG- -5'
11403 3' -58.1 NC_003085.1 + 37266 0.66 0.557897
Target:  5'- aGUUCGCCgggaaGCGC-UCGACGucgcCCACCu -3'
miRNA:   3'- -CGAGCGGga---CGUGaAGCUGCc---GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 4685 0.66 0.526338
Target:  5'- --gCGCCgagUUGCGCcucgUCGGCGGaCUACCu -3'
miRNA:   3'- cgaGCGG---GACGUGa---AGCUGCC-GGUGG- -5'
11403 3' -58.1 NC_003085.1 + 35389 0.67 0.505674
Target:  5'- gGCggaGUCCgagGCGCUcgcagauggccUCGACGGacaCGCCg -3'
miRNA:   3'- -CGag-CGGGa--CGUGA-----------AGCUGCCg--GUGG- -5'
11403 3' -58.1 NC_003085.1 + 21901 0.67 0.485366
Target:  5'- --gUGCCCUGCcagAUggCGACGucaccGCCGCCg -3'
miRNA:   3'- cgaGCGGGACG---UGaaGCUGC-----CGGUGG- -5'
11403 3' -58.1 NC_003085.1 + 27864 0.66 0.547311
Target:  5'- cGCUCGCgCCacGCAUgaUGuCGGCCAUg -3'
miRNA:   3'- -CGAGCG-GGa-CGUGaaGCuGCCGGUGg -5'
11403 3' -58.1 NC_003085.1 + 35828 0.66 0.536789
Target:  5'- uGCUCGCCgaGCGCcugCGACucagucguGCC-CCa -3'
miRNA:   3'- -CGAGCGGgaCGUGaa-GCUGc-------CGGuGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.