miRNA display CGI


Results 1 - 20 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 27346 0.66 0.348925
Target:  5'- cUGCuGCGGCGC-CGGGC-UCUGCUGg -3'
miRNA:   3'- -ACGcCGCCGUGcGCCUGcAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 40787 0.67 0.26252
Target:  5'- cGCGcacGCGucGCGCGCGGACGggCUgaaACCGUg -3'
miRNA:   3'- aCGC---CGC--CGUGCGCCUGCa-GG---UGGCA- -5'
11404 3' -62.8 NC_003085.1 + 49158 0.67 0.261238
Target:  5'- cGCGGgGGCA-GCGGACGgggacucggcggUCACCu- -3'
miRNA:   3'- aCGCCgCCGUgCGCCUGCa-----------GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 48653 1.07 0.000261
Target:  5'- cUGCGGCGGCACGCGGACGUCCACCGUg -3'
miRNA:   3'- -ACGCCGCCGUGCGCCUGCAGGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 497 0.66 0.325554
Target:  5'- cGCGGagaugaaGGCGCGCGGGCcgg-ACCGg -3'
miRNA:   3'- aCGCCg------CCGUGCGCCUGcaggUGGCa -5'
11404 3' -62.8 NC_003085.1 + 28066 0.66 0.325554
Target:  5'- aGCaGGCGGC-CGaUGGugaGUCCGCUGg -3'
miRNA:   3'- aCG-CCGCCGuGC-GCCug-CAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 33216 0.66 0.318026
Target:  5'- gGCGGCGGCGCaGCacgaGGAUGacgacgCCAgCCGc -3'
miRNA:   3'- aCGCCGCCGUG-CG----CCUGCa-----GGU-GGCa -5'
11404 3' -62.8 NC_003085.1 + 566 0.66 0.310629
Target:  5'- gGCGGCgcGGCugGCGGGCcaaugCU-CCGUg -3'
miRNA:   3'- aCGCCG--CCGugCGCCUGca---GGuGGCA- -5'
11404 3' -62.8 NC_003085.1 + 8670 0.67 0.296231
Target:  5'- cGUGGCcuugGGCGC-CGGGgugcCGUCCGCCa- -3'
miRNA:   3'- aCGCCG----CCGUGcGCCU----GCAGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 15361 0.67 0.269003
Target:  5'- aUGCGGUGGC-C-CuGACG-CCACCGa -3'
miRNA:   3'- -ACGCCGCCGuGcGcCUGCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 25008 0.67 0.287154
Target:  5'- cUGCGaGCGccagaagggccacaGCGCGCGGuuGaugCCGCCGUa -3'
miRNA:   3'- -ACGC-CGC--------------CGUGCGCCugCa--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 24186 0.67 0.296231
Target:  5'- cGCGGUgagguagacgGGCGCGCcgacgacGACGcCCGCCGc -3'
miRNA:   3'- aCGCCG----------CCGUGCGc------CUGCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 14372 0.66 0.348925
Target:  5'- aGCGGCuGGCuGCGCGGAUGaggggcagacCCGCUa- -3'
miRNA:   3'- aCGCCG-CCG-UGCGCCUGCa---------GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 18093 0.67 0.287154
Target:  5'- uUGCGGCcggGGUcgagcuucuugucgGCGCGGGCGggaCgGCCGg -3'
miRNA:   3'- -ACGCCG---CCG--------------UGCGCCUGCa--GgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 1587 0.66 0.333213
Target:  5'- aGCaGGCcGCACGCGcuGACGUCuCGCuCGa -3'
miRNA:   3'- aCG-CCGcCGUGCGC--CUGCAG-GUG-GCa -5'
11404 3' -62.8 NC_003085.1 + 43210 0.67 0.296231
Target:  5'- -aCGGCGGCGuCGUGuaGGCGUCgACCa- -3'
miRNA:   3'- acGCCGCCGU-GCGC--CUGCAGgUGGca -5'
11404 3' -62.8 NC_003085.1 + 24457 0.67 0.282358
Target:  5'- aGCGGCGccuucuGCAcCGCGGACGUgU-CCGa -3'
miRNA:   3'- aCGCCGC------CGU-GCGCCUGCAgGuGGCa -5'
11404 3' -62.8 NC_003085.1 + 32994 0.67 0.26252
Target:  5'- --aGGCGGCGCGCaGGuCGgacaCUGCCGUc -3'
miRNA:   3'- acgCCGCCGUGCG-CCuGCa---GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 12016 0.66 0.325554
Target:  5'- aUGCGGUGGCggGCGCGGgguugGCGcUCgcuaGCCGc -3'
miRNA:   3'- -ACGCCGCCG--UGCGCC-----UGC-AGg---UGGCa -5'
11404 3' -62.8 NC_003085.1 + 22064 0.66 0.318026
Target:  5'- cGCGGgcagguaccaCGcGCGCGCGGugucGCGuUCCACCa- -3'
miRNA:   3'- aCGCC----------GC-CGUGCGCC----UGC-AGGUGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.