miRNA display CGI


Results 21 - 40 of 75 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11404 3' -62.8 NC_003085.1 + 25008 0.67 0.287154
Target:  5'- cUGCGaGCGccagaagggccacaGCGCGCGGuuGaugCCGCCGUa -3'
miRNA:   3'- -ACGC-CGC--------------CGUGCGCCugCa--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 22064 0.66 0.318026
Target:  5'- cGCGGgcagguaccaCGcGCGCGCGGugucGCGuUCCACCa- -3'
miRNA:   3'- aCGCC----------GC-CGUGCGCC----UGC-AGGUGGca -5'
11404 3' -62.8 NC_003085.1 + 288 0.72 0.121175
Target:  5'- aGCGGCGGCAgGacCGGGCGgCCuCCGa -3'
miRNA:   3'- aCGCCGCCGUgC--GCCUGCaGGuGGCa -5'
11404 3' -62.8 NC_003085.1 + 20541 0.69 0.199368
Target:  5'- uUGgGGCGGUugGCcuGCGUCUGCUGg -3'
miRNA:   3'- -ACgCCGCCGugCGccUGCAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 49158 0.67 0.261238
Target:  5'- cGCGGgGGCA-GCGGACGgggacucggcggUCACCu- -3'
miRNA:   3'- aCGCCgCCGUgCGCCUGCa-----------GGUGGca -5'
11404 3' -62.8 NC_003085.1 + 28066 0.66 0.325554
Target:  5'- aGCaGGCGGC-CGaUGGugaGUCCGCUGg -3'
miRNA:   3'- aCG-CCGCCGuGC-GCCug-CAGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 48516 0.69 0.204514
Target:  5'- aGCGGCcugucuGGCACcCGGACG-CgGCCGa -3'
miRNA:   3'- aCGCCG------CCGUGcGCCUGCaGgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 497 0.66 0.325554
Target:  5'- cGCGGagaugaaGGCGCGCGGGCcgg-ACCGg -3'
miRNA:   3'- aCGCCg------CCGUGCGCCUGcaggUGGCa -5'
11404 3' -62.8 NC_003085.1 + 12016 0.66 0.325554
Target:  5'- aUGCGGUGGCggGCGCGGgguugGCGcUCgcuaGCCGc -3'
miRNA:   3'- -ACGCCGCCG--UGCGCC-----UGC-AGg---UGGCa -5'
11404 3' -62.8 NC_003085.1 + 2644 0.68 0.256164
Target:  5'- -uCGGCGGCGaggugaugcCGCccaaGGACGUggCCACCGUc -3'
miRNA:   3'- acGCCGCCGU---------GCG----CCUGCA--GGUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 7923 0.77 0.053317
Target:  5'- cGCGGCGGCA-GCaGACGucacUCCACCGg -3'
miRNA:   3'- aCGCCGCCGUgCGcCUGC----AGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 18093 0.67 0.287154
Target:  5'- uUGCGGCcggGGUcgagcuucuugucgGCGCGGGCGggaCgGCCGg -3'
miRNA:   3'- -ACGCCG---CCG--------------UGCGCCUGCa--GgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 21812 0.68 0.22626
Target:  5'- aGuCGGUGGCgAUGCGG-CGUcCCGCUGg -3'
miRNA:   3'- aC-GCCGCCG-UGCGCCuGCA-GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 47379 0.7 0.189414
Target:  5'- gUGCGGCGGCuGCGCucgucGCGUC-ACCGUc -3'
miRNA:   3'- -ACGCCGCCG-UGCGcc---UGCAGgUGGCA- -5'
11404 3' -62.8 NC_003085.1 + 9509 0.71 0.149865
Target:  5'- -aUGGCGGCGCGCGG-CGggUCAUCGg -3'
miRNA:   3'- acGCCGCCGUGCGCCuGCa-GGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 24186 0.67 0.296231
Target:  5'- cGCGGUgagguagacgGGCGCGCcgacgacGACGcCCGCCGc -3'
miRNA:   3'- aCGCCG----------CCGUGCGc------CUGCaGGUGGCa -5'
11404 3' -62.8 NC_003085.1 + 33216 0.66 0.318026
Target:  5'- gGCGGCGGCGCaGCacgaGGAUGacgacgCCAgCCGc -3'
miRNA:   3'- aCGCCGCCGUG-CG----CCUGCa-----GGU-GGCa -5'
11404 3' -62.8 NC_003085.1 + 4219 0.68 0.237851
Target:  5'- cGCGGCGGguUACGCuGAgCGUCaGCCGg -3'
miRNA:   3'- aCGCCGCC--GUGCGcCU-GCAGgUGGCa -5'
11404 3' -62.8 NC_003085.1 + 40483 0.67 0.303365
Target:  5'- cUGUcGCuGCugGCGGGCGUCgucgaGCCGg -3'
miRNA:   3'- -ACGcCGcCGugCGCCUGCAGg----UGGCa -5'
11404 3' -62.8 NC_003085.1 + 42381 0.67 0.296231
Target:  5'- -uCGGCGGCaugaGCGCGGGCcuuGUCCuCCu- -3'
miRNA:   3'- acGCCGCCG----UGCGCCUG---CAGGuGGca -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.