Results 21 - 40 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11404 | 5' | -55.9 | NC_003085.1 | + | 38028 | 0.68 | 0.485368 |
Target: 5'- cCCACuccuuGCA-CGGGCCGUAgaAGCAGCc- -3' miRNA: 3'- -GGUGu----CGUcGUCCGGCGU--UCGUUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 103 | 0.67 | 0.527807 |
Target: 5'- -gACGGCGGaCGGGCgGCGGGCccccaAugUGg -3' miRNA: 3'- ggUGUCGUC-GUCCGgCGUUCG-----UugAC- -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 21857 | 0.67 | 0.571552 |
Target: 5'- uCCACAcaccGC-GCAGGCCGaagguGGCcgAACUGg -3' miRNA: 3'- -GGUGU----CGuCGUCCGGCgu---UCG--UUGAC- -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 11589 | 0.66 | 0.626189 |
Target: 5'- cCCAcCAGCaccuccgacgucuGGCcGGCCagcGCAGGCAGCg- -3' miRNA: 3'- -GGU-GUCG-------------UCGuCCGG---CGUUCGUUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 42765 | 0.71 | 0.318835 |
Target: 5'- gCGguGCAGgGcGGCCGCAAGCcGCUc -3' miRNA: 3'- gGUguCGUCgU-CCGGCGUUCGuUGAc -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 37054 | 0.69 | 0.415357 |
Target: 5'- gCGCAGCGGCcccGCCGgguCGAGCAGCa- -3' miRNA: 3'- gGUGUCGUCGuc-CGGC---GUUCGUUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 29412 | 0.67 | 0.527807 |
Target: 5'- cCCGCucCAGgAGGgCGCGGGCGGCg- -3' miRNA: 3'- -GGUGucGUCgUCCgGCGUUCGUUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 29597 | 0.66 | 0.627309 |
Target: 5'- gCC-CAGCcguccAGCAGGCCGaaguaguGCGACa- -3' miRNA: 3'- -GGuGUCG-----UCGUCCGGCguu----CGUUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 20046 | 0.69 | 0.433757 |
Target: 5'- gCCugAGCcuccgccaugGGCuGGCCGCGcuggcgcAGCAACUc -3' miRNA: 3'- -GGugUCG----------UCGuCCGGCGU-------UCGUUGAc -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 3082 | 0.66 | 0.638513 |
Target: 5'- gCACAGCGugacgagccGCAGGCCGacGGCGGaUGa -3' miRNA: 3'- gGUGUCGU---------CGUCCGGCguUCGUUgAC- -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 8847 | 0.67 | 0.527807 |
Target: 5'- -gACGGCAGC-GGCCGUcAGCAc--- -3' miRNA: 3'- ggUGUCGUCGuCCGGCGuUCGUugac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 10410 | 0.68 | 0.485368 |
Target: 5'- gCCuucCAGCAGCAGGUaCGC--GCAGCg- -3' miRNA: 3'- -GGu--GUCGUCGUCCG-GCGuuCGUUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 192 | 0.67 | 0.560518 |
Target: 5'- gCCACAGgGGguGGCCaugacGCAGGaagaGACg- -3' miRNA: 3'- -GGUGUCgUCguCCGG-----CGUUCg---UUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 31639 | 0.67 | 0.571552 |
Target: 5'- gCCcCAGgGGCcuGCCGCAcaGGCGGCa- -3' miRNA: 3'- -GGuGUCgUCGucCGGCGU--UCGUUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 40327 | 0.66 | 0.604924 |
Target: 5'- uCCGcCAGguGCcgcucccagagAGGUCGCGacAGCAACUc -3' miRNA: 3'- -GGU-GUCguCG-----------UCCGGCGU--UCGUUGAc -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 25803 | 0.66 | 0.616109 |
Target: 5'- gCCugGGCGGCGuucgccugcgcGGCCuGCucGCGcuGCUGa -3' miRNA: 3'- -GGugUCGUCGU-----------CCGG-CGuuCGU--UGAC- -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 1580 | 0.75 | 0.193666 |
Target: 5'- gCCAgAG-AGCAGGCCGCAcGC-GCUGa -3' miRNA: 3'- -GGUgUCgUCGUCCGGCGUuCGuUGAC- -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 42712 | 0.71 | 0.310944 |
Target: 5'- gCCACGGCgcGGCAGGCCG--GGCAGu-- -3' miRNA: 3'- -GGUGUCG--UCGUCCGGCguUCGUUgac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 9089 | 0.71 | 0.343403 |
Target: 5'- gCCAgaGGCGuCAGcGCCGCGGGCAGCa- -3' miRNA: 3'- -GGUg-UCGUcGUC-CGGCGUUCGUUGac -5' |
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11404 | 5' | -55.9 | NC_003085.1 | + | 39268 | 0.69 | 0.405867 |
Target: 5'- cCCGCGGgugAGCAGGUCGCGcauuGCAGCc- -3' miRNA: 3'- -GGUGUCg--UCGUCCGGCGUu---CGUUGac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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