miRNA display CGI


Results 1 - 20 of 89 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11409 5' -62 NC_003085.1 + 48945 0.67 0.309556
Target:  5'- aGGGCaGCGCgCA--UCCGGuCCGGCCcGCg -3'
miRNA:   3'- -CCCG-CGUG-GUcaGGGCC-GGUCGGuUG- -5'
11409 5' -62 NC_003085.1 + 48688 0.69 0.230151
Target:  5'- uGGGCGCACCGuugCgCGGCgUGGCgGACu -3'
miRNA:   3'- -CCCGCGUGGUca-GgGCCG-GUCGgUUG- -5'
11409 5' -62 NC_003085.1 + 47966 0.7 0.192256
Target:  5'- aGGCGCACCGG-CCgaGGCUGG-CGACg -3'
miRNA:   3'- cCCGCGUGGUCaGGg-CCGGUCgGUUG- -5'
11409 5' -62 NC_003085.1 + 47658 1.11 0.000131
Target:  5'- gGGGCGCACCAGUCCCGGCCAGCCAACg -3'
miRNA:   3'- -CCCGCGUGGUCAGGGCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 46687 0.66 0.331632
Target:  5'- uGGaGCGCcgccgcuGCCuGcUUCCGGCCAGCgGAg -3'
miRNA:   3'- -CC-CGCG-------UGGuC-AGGGCCGGUCGgUUg -5'
11409 5' -62 NC_003085.1 + 45898 0.7 0.168641
Target:  5'- aGGCGCGCUugcgCCCGGCC-GCCuugAGCg -3'
miRNA:   3'- cCCGCGUGGuca-GGGCCGGuCGG---UUG- -5'
11409 5' -62 NC_003085.1 + 45818 0.7 0.187312
Target:  5'- -cGC-CACCAGugcagcgucccUCUCGGCCAGCCAGu -3'
miRNA:   3'- ccCGcGUGGUC-----------AGGGCCGGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 45601 0.68 0.235457
Target:  5'- cGGGCGCGCCgucgacgcgccguGGUCCUGGaUgGGCaguGCg -3'
miRNA:   3'- -CCCGCGUGG-------------UCAGGGCC-GgUCGgu-UG- -5'
11409 5' -62 NC_003085.1 + 45228 0.67 0.27416
Target:  5'- -aGCGCugCGG-CCCGGCUgacGCuCAGCg -3'
miRNA:   3'- ccCGCGugGUCaGGGCCGGu--CG-GUUG- -5'
11409 5' -62 NC_003085.1 + 44665 0.69 0.202489
Target:  5'- cGGGCuuuGgGCCcGUCCUGGCgGauGCCAGCa -3'
miRNA:   3'- -CCCG---CgUGGuCAGGGCCGgU--CGGUUG- -5'
11409 5' -62 NC_003085.1 + 44106 0.67 0.309556
Target:  5'- cGGaCGCGCCgAGUCCCuGGUCcuucuccgcGGCCAcGCg -3'
miRNA:   3'- cCC-GCGUGG-UCAGGG-CCGG---------UCGGU-UG- -5'
11409 5' -62 NC_003085.1 + 44082 0.72 0.135869
Target:  5'- cGGUuCGCC-GUCCaucgccgCGGCCAGCCGACg -3'
miRNA:   3'- cCCGcGUGGuCAGG-------GCCGGUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 43902 0.68 0.242081
Target:  5'- uGGCGCACC-GUCgCGGCgccaGGCCcuuuGCg -3'
miRNA:   3'- cCCGCGUGGuCAGgGCCGg---UCGGu---UG- -5'
11409 5' -62 NC_003085.1 + 43618 0.72 0.136235
Target:  5'- cGGUGCcgucCCAGUCCCGGaCCugcagGGCUGACg -3'
miRNA:   3'- cCCGCGu---GGUCAGGGCC-GG-----UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 43452 0.7 0.192256
Target:  5'- cGGGCGUAcauccgcgcCCAG-CCguaGGCgAGCCAACu -3'
miRNA:   3'- -CCCGCGU---------GGUCaGGg--CCGgUCGGUUG- -5'
11409 5' -62 NC_003085.1 + 42899 0.66 0.323891
Target:  5'- gGGGCGCugucacggguuguGCCAGUCaaCUGcGCCAGuCCGu- -3'
miRNA:   3'- -CCCGCG-------------UGGUCAG--GGC-CGGUC-GGUug -5'
11409 5' -62 NC_003085.1 + 42841 0.67 0.287215
Target:  5'- cGGCGCGcgucuucgucuccCCAccUCCCGGCCcGGCCGGg -3'
miRNA:   3'- cCCGCGU-------------GGUc-AGGGCCGG-UCGGUUg -5'
11409 5' -62 NC_003085.1 + 42716 0.66 0.340304
Target:  5'- cGGCGCGgCAGg-CCGGgCAGUCGGa -3'
miRNA:   3'- cCCGCGUgGUCagGGCCgGUCGGUUg -5'
11409 5' -62 NC_003085.1 + 42458 0.67 0.294994
Target:  5'- aGGGCGCcggugaugGCagugaggAGUCCgaagCGGCCggAGCCAACg -3'
miRNA:   3'- -CCCGCG--------UGg------UCAGG----GCCGG--UCGGUUG- -5'
11409 5' -62 NC_003085.1 + 42351 0.67 0.309556
Target:  5'- cGGCGCgugACCGucUUCCGGCCGGCgAGg -3'
miRNA:   3'- cCCGCG---UGGUc-AGGGCCGGUCGgUUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.