miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 40664 0.74 0.140082
Target:  5'- -gCCGC-GCAACCUcgcggAGCCGCCGGcGCAg -3'
miRNA:   3'- aaGGCGuUGUUGGG-----UCGGCGGCC-UGU- -5'
11410 5' -59 NC_003085.1 + 10081 0.73 0.160708
Target:  5'- cUUCCGCAugAGCCC--CCGCCGG-CGu -3'
miRNA:   3'- -AAGGCGUugUUGGGucGGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 37225 0.72 0.184033
Target:  5'- aUUCUG--GCGGCCCAGCCGCCGcGCu -3'
miRNA:   3'- -AAGGCguUGUUGGGUCGGCGGCcUGu -5'
11410 5' -59 NC_003085.1 + 15172 0.71 0.210299
Target:  5'- cUCUGCGcugACGGCCCGGCUgaGCCGGuGCGc -3'
miRNA:   3'- aAGGCGU---UGUUGGGUCGG--CGGCC-UGU- -5'
11410 5' -59 NC_003085.1 + 18742 0.71 0.229956
Target:  5'- cUgCGCAGCAugCCgaAGCCGCCgcuggagcgggcgauGGACAa -3'
miRNA:   3'- aAgGCGUUGUugGG--UCGGCGG---------------CCUGU- -5'
11410 5' -59 NC_003085.1 + 31791 0.7 0.246016
Target:  5'- ---gGCGaaGCGGCCCGGCCGCucgcgaCGGACAc -3'
miRNA:   3'- aaggCGU--UGUUGGGUCGGCG------GCCUGU- -5'
11410 5' -59 NC_003085.1 + 35096 0.7 0.246016
Target:  5'- aUCCGC-GCAG-CCAGCCGCUGG-Cu -3'
miRNA:   3'- aAGGCGuUGUUgGGUCGGCGGCCuGu -5'
11410 5' -59 NC_003085.1 + 28540 0.7 0.246016
Target:  5'- aUCCGCGGCGucgucGCCUAcGaCUGCUGGACGg -3'
miRNA:   3'- aAGGCGUUGU-----UGGGU-C-GGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 31592 0.7 0.246016
Target:  5'- aUCCGUuguuguGCAGCCCcaggaggcaccGGCCGCgGGGCc -3'
miRNA:   3'- aAGGCGu-----UGUUGGG-----------UCGGCGgCCUGu -5'
11410 5' -59 NC_003085.1 + 24360 0.67 0.365646
Target:  5'- --aCGgGACGGCCUuuGGCgGCCGGGCc -3'
miRNA:   3'- aagGCgUUGUUGGG--UCGgCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 25869 0.68 0.3487
Target:  5'- -aCCGUcgAGCAACUCGccGCCguGCCGGACGc -3'
miRNA:   3'- aaGGCG--UUGUUGGGU--CGG--CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 19055 0.68 0.340439
Target:  5'- aUUCCGCGGC-GCgCGGCggagcaggCGCCGGGCc -3'
miRNA:   3'- -AAGGCGUUGuUGgGUCG--------GCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 6961 0.68 0.327519
Target:  5'- cUUCgGCAGCGAugcccucuccguugcUCCGGCCGCuuCGGACu -3'
miRNA:   3'- -AAGgCGUUGUU---------------GGGUCGGCG--GCCUGu -5'
11410 5' -59 NC_003085.1 + 25295 0.69 0.308826
Target:  5'- -aCCGCGACGG-CCGGCCaGgUGGACGa -3'
miRNA:   3'- aaGGCGUUGUUgGGUCGG-CgGCCUGU- -5'
11410 5' -59 NC_003085.1 + 22940 0.7 0.258994
Target:  5'- -gCCGCGucgACGGCgCGGCgaaGCCGGACGa -3'
miRNA:   3'- aaGGCGU---UGUUGgGUCGg--CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 36006 0.7 0.258332
Target:  5'- cUCCGCGACAGCUUggcggauGGCgGCCauGGGCAc -3'
miRNA:   3'- aAGGCGUUGUUGGG-------UCGgCGG--CCUGU- -5'
11410 5' -59 NC_003085.1 + 47558 1.05 0.000587
Target:  5'- cUUCCGCAACAACCCAGCCGCCGGACAc -3'
miRNA:   3'- -AAGGCGUUGUUGGGUCGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 12979 0.66 0.468444
Target:  5'- -aCUGCGucCAACCCuaaAGCCGCCaGuGGCAc -3'
miRNA:   3'- aaGGCGUu-GUUGGG---UCGGCGG-C-CUGU- -5'
11410 5' -59 NC_003085.1 + 9872 0.66 0.458478
Target:  5'- cUCCGCGACGcGCuCCAGCuUGCCaGugGc -3'
miRNA:   3'- aAGGCGUUGU-UG-GGUCG-GCGGcCugU- -5'
11410 5' -59 NC_003085.1 + 715 0.66 0.458478
Target:  5'- cUCCGCGugGcGCCUgacgcGCCGCucaCGGACAg -3'
miRNA:   3'- aAGGCGUugU-UGGGu----CGGCG---GCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.