miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 22478 0.7 0.252436
Target:  5'- -cUCGCggUAGCCCAGCCgGCUGcGCAg -3'
miRNA:   3'- aaGGCGuuGUUGGGUCGG-CGGCcUGU- -5'
11410 5' -59 NC_003085.1 + 31483 0.7 0.252436
Target:  5'- cUCCGUgcccuGCGGCCCGcGCUGCCGG-CGc -3'
miRNA:   3'- aAGGCGu----UGUUGGGU-CGGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 36006 0.7 0.258332
Target:  5'- cUCCGCGACAGCUUggcggauGGCgGCCauGGGCAc -3'
miRNA:   3'- aAGGCGUUGUUGGG-------UCGgCGG--CCUGU- -5'
11410 5' -59 NC_003085.1 + 42520 0.7 0.258994
Target:  5'- -gCCGaaguCGACcGCCCAGCCGCCcgGGAUg -3'
miRNA:   3'- aaGGC----GUUGuUGGGUCGGCGG--CCUGu -5'
11410 5' -59 NC_003085.1 + 47202 0.7 0.258994
Target:  5'- gUCCGCGACGagGCCCc-CCGgUGGGCAg -3'
miRNA:   3'- aAGGCGUUGU--UGGGucGGCgGCCUGU- -5'
11410 5' -59 NC_003085.1 + 22940 0.7 0.258994
Target:  5'- -gCCGCGucgACGGCgCGGCgaaGCCGGACGa -3'
miRNA:   3'- aaGGCGU---UGUUGgGUCGg--CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 20078 0.69 0.279502
Target:  5'- --gCGCAGCAACUCcGCCauggcguucuGCCGGGCGg -3'
miRNA:   3'- aagGCGUUGUUGGGuCGG----------CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 7206 0.69 0.286619
Target:  5'- aUCCGC----GCCCuGCCGCUGGAg- -3'
miRNA:   3'- aAGGCGuuguUGGGuCGGCGGCCUgu -5'
11410 5' -59 NC_003085.1 + 30959 0.69 0.308826
Target:  5'- cUUCGCGAauCAugCUGGCCGCCuugaGGACGg -3'
miRNA:   3'- aAGGCGUU--GUugGGUCGGCGG----CCUGU- -5'
11410 5' -59 NC_003085.1 + 25295 0.69 0.308826
Target:  5'- -aCCGCGACGG-CCGGCCaGgUGGACGa -3'
miRNA:   3'- aaGGCGUUGUUgGGUCGG-CgGCCUGU- -5'
11410 5' -59 NC_003085.1 + 1323 0.68 0.324346
Target:  5'- -gCCGCGcuggaggagGCAGCCCAGaCUGCUGG-CGa -3'
miRNA:   3'- aaGGCGU---------UGUUGGGUC-GGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 6961 0.68 0.327519
Target:  5'- cUUCgGCAGCGAugcccucuccguugcUCCGGCCGCuuCGGACu -3'
miRNA:   3'- -AAGgCGUUGUU---------------GGGUCGGCG--GCCUGu -5'
11410 5' -59 NC_003085.1 + 44397 0.68 0.332321
Target:  5'- --aCGCGACcacgauGCCCAGCCGUCaGGAg- -3'
miRNA:   3'- aagGCGUUGu-----UGGGUCGGCGG-CCUgu -5'
11410 5' -59 NC_003085.1 + 19055 0.68 0.340439
Target:  5'- aUUCCGCGGC-GCgCGGCggagcaggCGCCGGGCc -3'
miRNA:   3'- -AAGGCGUUGuUGgGUCG--------GCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 38712 0.68 0.340439
Target:  5'- cUUCC-CGGC-GCCCGuGUgGCCGGACAg -3'
miRNA:   3'- -AAGGcGUUGuUGGGU-CGgCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 7610 0.68 0.340439
Target:  5'- -aCCGCGAgGuggaCCAG-CGCCGGGCGg -3'
miRNA:   3'- aaGGCGUUgUug--GGUCgGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 25869 0.68 0.3487
Target:  5'- -aCCGUcgAGCAACUCGccGCCguGCCGGACGc -3'
miRNA:   3'- aaGGCG--UUGUUGGGU--CGG--CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 12238 0.68 0.3487
Target:  5'- --gCGCGGCGGCUgGGCCGCCaGAa- -3'
miRNA:   3'- aagGCGUUGUUGGgUCGGCGGcCUgu -5'
11410 5' -59 NC_003085.1 + 27525 0.68 0.357103
Target:  5'- -cCUGCAugAAgCUGGCgaUGCCGGACAg -3'
miRNA:   3'- aaGGCGUugUUgGGUCG--GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 1484 0.67 0.365646
Target:  5'- cUCCGCGacuugcucgacGCGGCCCGuccGgCGCuCGGGCAa -3'
miRNA:   3'- aAGGCGU-----------UGUUGGGU---CgGCG-GCCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.