miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 12979 0.66 0.468444
Target:  5'- -aCUGCGucCAACCCuaaAGCCGCCaGuGGCAc -3'
miRNA:   3'- aaGGCGUu-GUUGGG---UCGGCGG-C-CUGU- -5'
11410 5' -59 NC_003085.1 + 13737 0.66 0.467443
Target:  5'- gUCaCGCGaaGCcGCCCaacgggaGGCCGuuGGACGa -3'
miRNA:   3'- aAG-GCGU--UGuUGGG-------UCGGCggCCUGU- -5'
11410 5' -59 NC_003085.1 + 14162 0.67 0.37433
Target:  5'- -gCCGCcGCGACCU-GCUGCCGaGCAa -3'
miRNA:   3'- aaGGCGuUGUUGGGuCGGCGGCcUGU- -5'
11410 5' -59 NC_003085.1 + 14298 0.67 0.37433
Target:  5'- -gCCGC-GCAGCCCucaguaagAGUCGCCaGACGg -3'
miRNA:   3'- aaGGCGuUGUUGGG--------UCGGCGGcCUGU- -5'
11410 5' -59 NC_003085.1 + 14498 0.67 0.410435
Target:  5'- aUCCGCAagaaguACAACCUcaaGGCCGagaggGGACAc -3'
miRNA:   3'- aAGGCGU------UGUUGGG---UCGGCgg---CCUGU- -5'
11410 5' -59 NC_003085.1 + 15172 0.71 0.210299
Target:  5'- cUCUGCGcugACGGCCCGGCUgaGCCGGuGCGc -3'
miRNA:   3'- aAGGCGU---UGUUGGGUCGG--CGGCC-UGU- -5'
11410 5' -59 NC_003085.1 + 18742 0.71 0.229956
Target:  5'- cUgCGCAGCAugCCgaAGCCGCCgcuggagcgggcgauGGACAa -3'
miRNA:   3'- aAgGCGUUGUugGG--UCGGCGG---------------CCUGU- -5'
11410 5' -59 NC_003085.1 + 19055 0.68 0.340439
Target:  5'- aUUCCGCGGC-GCgCGGCggagcaggCGCCGGGCc -3'
miRNA:   3'- -AAGGCGUUGuUGgGUCG--------GCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 19130 0.66 0.458478
Target:  5'- -cCCGCGACAGCguccgCCAGggcCCGCUGGGu- -3'
miRNA:   3'- aaGGCGUUGUUG-----GGUC---GGCGGCCUgu -5'
11410 5' -59 NC_003085.1 + 19836 0.66 0.432151
Target:  5'- -aCCGCAACAacggcgaACCgcugucgcacuacuuCGGCCuGCUGGACGg -3'
miRNA:   3'- aaGGCGUUGU-------UGG---------------GUCGG-CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 20078 0.69 0.279502
Target:  5'- --gCGCAGCAACUCcGCCauggcguucuGCCGGGCGg -3'
miRNA:   3'- aagGCGUUGUUGGGuCGG----------CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 20351 0.67 0.392112
Target:  5'- gUUCCGCGccGCGucGCCgCuGCugaCGCCGGGCAa -3'
miRNA:   3'- -AAGGCGU--UGU--UGG-GuCG---GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 20450 0.66 0.419794
Target:  5'- gUCCGCcGC-GCgCgAGCCGCUGGAgAa -3'
miRNA:   3'- aAGGCGuUGuUG-GgUCGGCGGCCUgU- -5'
11410 5' -59 NC_003085.1 + 22111 0.67 0.37433
Target:  5'- -gCCGCccAGCAgaGCCCGGCgccgcagcaGCCGGACc -3'
miRNA:   3'- aaGGCG--UUGU--UGGGUCGg--------CGGCCUGu -5'
11410 5' -59 NC_003085.1 + 22478 0.7 0.252436
Target:  5'- -cUCGCggUAGCCCAGCCgGCUGcGCAg -3'
miRNA:   3'- aaGGCGuuGUUGGGUCGG-CGGCcUGU- -5'
11410 5' -59 NC_003085.1 + 22848 0.66 0.435996
Target:  5'- gUCCGCAgacgaggagGCGACggUCGaagaagagcgugucGCCGCCGGACu -3'
miRNA:   3'- aAGGCGU---------UGUUG--GGU--------------CGGCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 22940 0.7 0.258994
Target:  5'- -gCCGCGucgACGGCgCGGCgaaGCCGGACGa -3'
miRNA:   3'- aaGGCGU---UGUUGgGUCGg--CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 24033 0.67 0.373455
Target:  5'- -gCCGCucaguGCuGCUCAGCCguugccguugaggGCCGGACGc -3'
miRNA:   3'- aaGGCGu----UGuUGGGUCGG-------------CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 24298 0.67 0.401207
Target:  5'- -aCCGCcACcaGGCCaCGGUCGCCGGcCAc -3'
miRNA:   3'- aaGGCGuUG--UUGG-GUCGGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 24360 0.67 0.365646
Target:  5'- --aCGgGACGGCCUuuGGCgGCCGGGCc -3'
miRNA:   3'- aagGCgUUGUUGGG--UCGgCGGCCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.