miRNA display CGI


Results 21 - 40 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 35096 0.7 0.246016
Target:  5'- aUCCGC-GCAG-CCAGCCGCUGG-Cu -3'
miRNA:   3'- aAGGCGuUGUUgGGUCGGCGGCCuGu -5'
11410 5' -59 NC_003085.1 + 34263 0.71 0.22168
Target:  5'- cUUCCGCGGCGcggcgcuggcGCaCCGGCUcaGCCGGGCc -3'
miRNA:   3'- -AAGGCGUUGU----------UG-GGUCGG--CGGCCUGu -5'
11410 5' -59 NC_003085.1 + 31791 0.7 0.246016
Target:  5'- ---gGCGaaGCGGCCCGGCCGCucgcgaCGGACAc -3'
miRNA:   3'- aaggCGU--UGUUGGGUCGGCG------GCCUGU- -5'
11410 5' -59 NC_003085.1 + 31592 0.7 0.246016
Target:  5'- aUCCGUuguuguGCAGCCCcaggaggcaccGGCCGCgGGGCc -3'
miRNA:   3'- aAGGCGu-----UGUUGGG-----------UCGGCGgCCUGu -5'
11410 5' -59 NC_003085.1 + 31483 0.7 0.252436
Target:  5'- cUCCGUgcccuGCGGCCCGcGCUGCCGG-CGc -3'
miRNA:   3'- aAGGCGu----UGUUGGGU-CGGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 31450 0.67 0.392112
Target:  5'- -aUgGCAcguACGGCCuCGcGCCGUCGGACAg -3'
miRNA:   3'- aaGgCGU---UGUUGG-GU-CGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 31387 0.66 0.438892
Target:  5'- -gCCGCAAagAGgCCAGCCGCacguacucgaaGGACGg -3'
miRNA:   3'- aaGGCGUUg-UUgGGUCGGCGg----------CCUGU- -5'
11410 5' -59 NC_003085.1 + 31040 0.66 0.429281
Target:  5'- aUUCGCGAauGCCCAGaauGCCGGugGa -3'
miRNA:   3'- aAGGCGUUguUGGGUCgg-CGGCCugU- -5'
11410 5' -59 NC_003085.1 + 30959 0.69 0.308826
Target:  5'- cUUCGCGAauCAugCUGGCCGCCuugaGGACGg -3'
miRNA:   3'- aAGGCGUU--GUugGGUCGGCGG----CCUGU- -5'
11410 5' -59 NC_003085.1 + 29257 0.66 0.458478
Target:  5'- -aCCGCAAC-GCCCAGuCCGaauuCGGcCAg -3'
miRNA:   3'- aaGGCGUUGuUGGGUC-GGCg---GCCuGU- -5'
11410 5' -59 NC_003085.1 + 28615 0.67 0.383153
Target:  5'- -aCCGCAGCGgcgaGCUCGG-CGCCGGuCGc -3'
miRNA:   3'- aaGGCGUUGU----UGGGUCgGCGGCCuGU- -5'
11410 5' -59 NC_003085.1 + 28540 0.7 0.246016
Target:  5'- aUCCGCGGCGucgucGCCUAcGaCUGCUGGACGg -3'
miRNA:   3'- aAGGCGUUGU-----UGGGU-C-GGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 28358 0.66 0.438892
Target:  5'- aUCCGCGGCAccGCCguGgCG-CGGACc -3'
miRNA:   3'- aAGGCGUUGU--UGGguCgGCgGCCUGu -5'
11410 5' -59 NC_003085.1 + 27525 0.68 0.357103
Target:  5'- -cCUGCAugAAgCUGGCgaUGCCGGACAg -3'
miRNA:   3'- aaGGCGUugUUgGGUCG--GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 26164 0.66 0.448626
Target:  5'- cUCCaGCGGCAcCCCauAGCCG-UGGACGa -3'
miRNA:   3'- aAGG-CGUUGUuGGG--UCGGCgGCCUGU- -5'
11410 5' -59 NC_003085.1 + 25869 0.68 0.3487
Target:  5'- -aCCGUcgAGCAACUCGccGCCguGCCGGACGc -3'
miRNA:   3'- aaGGCG--UUGUUGGGU--CGG--CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 25295 0.69 0.308826
Target:  5'- -aCCGCGACGG-CCGGCCaGgUGGACGa -3'
miRNA:   3'- aaGGCGUUGUUgGGUCGG-CgGCCUGU- -5'
11410 5' -59 NC_003085.1 + 25006 0.67 0.383153
Target:  5'- gUCCGCGguGCAGaaggcGCCGCUGGGCAc -3'
miRNA:   3'- aAGGCGU--UGUUgggu-CGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 24360 0.67 0.365646
Target:  5'- --aCGgGACGGCCUuuGGCgGCCGGGCc -3'
miRNA:   3'- aagGCgUUGUUGGG--UCGgCGGCCUGu -5'
11410 5' -59 NC_003085.1 + 24298 0.67 0.401207
Target:  5'- -aCCGCcACcaGGCCaCGGUCGCCGGcCAc -3'
miRNA:   3'- aaGGCGuUG--UUGG-GUCGGCGGCCuGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.