miRNA display CGI


Results 1 - 20 of 78 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11410 5' -59 NC_003085.1 + 48842 0.71 0.227565
Target:  5'- gUCCGCGcCAGCCUcgAGCgCGCCcaGGACGg -3'
miRNA:   3'- aAGGCGUuGUUGGG--UCG-GCGG--CCUGU- -5'
11410 5' -59 NC_003085.1 + 47558 1.05 0.000587
Target:  5'- cUUCCGCAACAACCCAGCCGCCGGACAc -3'
miRNA:   3'- -AAGGCGUUGUUGGGUCGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 47202 0.7 0.258994
Target:  5'- gUCCGCGACGagGCCCc-CCGgUGGGCAg -3'
miRNA:   3'- aAGGCGUUGU--UGGGucGGCgGCCUGU- -5'
11410 5' -59 NC_003085.1 + 46609 0.78 0.068883
Target:  5'- gUCgGCAugGcucagcccuccucGCCCGGCUGCCGGGCAg -3'
miRNA:   3'- aAGgCGUugU-------------UGGGUCGGCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 45888 0.67 0.392112
Target:  5'- cUCgGCAGCGaggcgcgcuugcGCCCGGCCGCCu---- -3'
miRNA:   3'- aAGgCGUUGU------------UGGGUCGGCGGccugu -5'
11410 5' -59 NC_003085.1 + 45045 0.66 0.472462
Target:  5'- -aCCGUcgGGCAccggaguagaugcgcGCCCAGCgUGCCGGAa- -3'
miRNA:   3'- aaGGCG--UUGU---------------UGGGUCG-GCGGCCUgu -5'
11410 5' -59 NC_003085.1 + 44510 0.73 0.160708
Target:  5'- cUUCUGCGcgguGguGCCCAGCaccCGCCGGACGa -3'
miRNA:   3'- -AAGGCGU----UguUGGGUCG---GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 44397 0.68 0.332321
Target:  5'- --aCGCGACcacgauGCCCAGCCGUCaGGAg- -3'
miRNA:   3'- aagGCGUUGu-----UGGGUCGGCGG-CCUgu -5'
11410 5' -59 NC_003085.1 + 44131 0.66 0.419794
Target:  5'- cUCCGCGGCcacgcgcuuCUCGGUCGCCuucaGGACGg -3'
miRNA:   3'- aAGGCGUUGuu-------GGGUCGGCGG----CCUGU- -5'
11410 5' -59 NC_003085.1 + 43713 0.67 0.392112
Target:  5'- gUCCGuCAAUGGCCCAaucgaCGCgGGACAc -3'
miRNA:   3'- aAGGC-GUUGUUGGGUcg---GCGgCCUGU- -5'
11410 5' -59 NC_003085.1 + 42708 0.75 0.105945
Target:  5'- gUCCGCcACGGCgCGGCagGCCGGGCAg -3'
miRNA:   3'- aAGGCGuUGUUGgGUCGg-CGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 42520 0.7 0.258994
Target:  5'- -gCCGaaguCGACcGCCCAGCCGCCcgGGAUg -3'
miRNA:   3'- aaGGC----GUUGuUGGGUCGGCGG--CCUGu -5'
11410 5' -59 NC_003085.1 + 42182 0.66 0.468444
Target:  5'- -gUCGCAGcCAGCCuCGGCaugaggCGCUGGGCGa -3'
miRNA:   3'- aaGGCGUU-GUUGG-GUCG------GCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 40664 0.74 0.140082
Target:  5'- -gCCGC-GCAACCUcgcggAGCCGCCGGcGCAg -3'
miRNA:   3'- aaGGCGuUGUUGGG-----UCGGCGGCC-UGU- -5'
11410 5' -59 NC_003085.1 + 40573 0.65 0.474477
Target:  5'- -gCCGCgGugGACCCcaagugcagcauuGCCGaCCGGGCGa -3'
miRNA:   3'- aaGGCG-UugUUGGGu------------CGGC-GGCCUGU- -5'
11410 5' -59 NC_003085.1 + 38712 0.68 0.340439
Target:  5'- cUUCC-CGGC-GCCCGuGUgGCCGGACAg -3'
miRNA:   3'- -AAGGcGUUGuUGGGU-CGgCGGCCUGU- -5'
11410 5' -59 NC_003085.1 + 37228 0.74 0.125358
Target:  5'- gUUCCGCAugGGCCCAGCC-UUGGAg- -3'
miRNA:   3'- -AAGGCGUugUUGGGUCGGcGGCCUgu -5'
11410 5' -59 NC_003085.1 + 37225 0.72 0.184033
Target:  5'- aUUCUG--GCGGCCCAGCCGCCGcGCu -3'
miRNA:   3'- -AAGGCguUGUUGGGUCGGCGGCcUGu -5'
11410 5' -59 NC_003085.1 + 36006 0.7 0.258332
Target:  5'- cUCCGCGACAGCUUggcggauGGCgGCCauGGGCAc -3'
miRNA:   3'- aAGGCGUUGUUGGG-------UCGgCGG--CCUGU- -5'
11410 5' -59 NC_003085.1 + 35194 0.67 0.410435
Target:  5'- -aCgGCAGCAGCCUGGCCGCaCGu--- -3'
miRNA:   3'- aaGgCGUUGUUGGGUCGGCG-GCcugu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.