miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11411 5' -54.6 NC_003085.1 + 47736 0.68 0.599874
Target:  5'- gGGCgcgGuGCGCGUAgcGUCGcaauucgacggccAGGCGCUCg -3'
miRNA:   3'- aCCGa--C-UGCGUAU--CAGU-------------UCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 47013 1.13 0.000491
Target:  5'- gUGGCUGACGCAUAGUCAAGGCGCUCCa -3'
miRNA:   3'- -ACCGACUGCGUAUCAGUUCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 46643 0.71 0.39299
Target:  5'- gGGCaGACGUGUugccAGUgaugcCGAGGCGCUUCg -3'
miRNA:   3'- aCCGaCUGCGUA----UCA-----GUUCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 46302 0.68 0.578697
Target:  5'- cUGGCUGugcGCGCGgaAGUCAGcGaGCGC-CCa -3'
miRNA:   3'- -ACCGAC---UGCGUa-UCAGUU-C-CGCGaGG- -5'
11411 5' -54.6 NC_003085.1 + 45913 0.68 0.578697
Target:  5'- cGGCcgccuUGA-GCGUGGUCcaaGGGGCGCacUCCu -3'
miRNA:   3'- aCCG-----ACUgCGUAUCAG---UUCCGCG--AGG- -5'
11411 5' -54.6 NC_003085.1 + 45598 0.67 0.645834
Target:  5'- cGGCgGGCGCGccGUCGAcGCGCcguggUCCu -3'
miRNA:   3'- aCCGaCUGCGUauCAGUUcCGCG-----AGG- -5'
11411 5' -54.6 NC_003085.1 + 45240 0.68 0.600992
Target:  5'- cGGCUGACGCucagcGUAacccgccgcgcGUCAGcGGCguccugcgucuGCUCCa -3'
miRNA:   3'- aCCGACUGCG-----UAU-----------CAGUU-CCG-----------CGAGG- -5'
11411 5' -54.6 NC_003085.1 + 43891 0.66 0.71138
Target:  5'- gGGCguagacgUGGCGCAccGUCGcGGCGCcaggCCc -3'
miRNA:   3'- aCCG-------ACUGCGUauCAGUuCCGCGa---GG- -5'
11411 5' -54.6 NC_003085.1 + 43815 0.69 0.50253
Target:  5'- cGGCgcucGCGCA-AGUCAcaGGGCgagcGCUCCa -3'
miRNA:   3'- aCCGac--UGCGUaUCAGU--UCCG----CGAGG- -5'
11411 5' -54.6 NC_003085.1 + 43587 0.66 0.723361
Target:  5'- cGGCgccACgGCAgaGGUCGcAGGCGCUgCCa -3'
miRNA:   3'- aCCGac-UG-CGUa-UCAGU-UCCGCGA-GG- -5'
11411 5' -54.6 NC_003085.1 + 43431 0.69 0.513172
Target:  5'- aGGUcauccUGGCGCGgcGUCcGGGCGUacaUCCg -3'
miRNA:   3'- aCCG-----ACUGCGUauCAGuUCCGCG---AGG- -5'
11411 5' -54.6 NC_003085.1 + 41810 0.67 0.668219
Target:  5'- aGGCUcGCGCAU-GUC--GGCGCcgCCc -3'
miRNA:   3'- aCCGAcUGCGUAuCAGuuCCGCGa-GG- -5'
11411 5' -54.6 NC_003085.1 + 41151 0.66 0.694887
Target:  5'- cUGGCcgGAUGCcuccaacggcuaccUGGgCAAGGgGCUCCa -3'
miRNA:   3'- -ACCGa-CUGCGu-------------AUCaGUUCCgCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 40775 0.66 0.712473
Target:  5'- gUGGCUGACGU-UGG-CGGacggcaccccGGCGC-CCa -3'
miRNA:   3'- -ACCGACUGCGuAUCaGUU----------CCGCGaGG- -5'
11411 5' -54.6 NC_003085.1 + 40332 0.68 0.600992
Target:  5'- gGGCUGGCGCGUGccUCAguGGGCGgUg- -3'
miRNA:   3'- aCCGACUGCGUAUc-AGU--UCCGCgAgg -5'
11411 5' -54.6 NC_003085.1 + 39731 0.69 0.545619
Target:  5'- cUGGacuccaUGACGCcgAGgacaCAcAGGCGUUCCg -3'
miRNA:   3'- -ACCg-----ACUGCGuaUCa---GU-UCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 39480 0.7 0.471212
Target:  5'- -uGCcGACGUGcgcGUCGAGGCGCUCg -3'
miRNA:   3'- acCGaCUGCGUau-CAGUUCCGCGAGg -5'
11411 5' -54.6 NC_003085.1 + 38248 0.73 0.300173
Target:  5'- gGGCUGACGguUGcacGUCAuGGCGUgCCu -3'
miRNA:   3'- aCCGACUGCguAU---CAGUuCCGCGaGG- -5'
11411 5' -54.6 NC_003085.1 + 38147 0.72 0.340138
Target:  5'- -uGCUGGCGU-UGGUgGuGGCGCUCCc -3'
miRNA:   3'- acCGACUGCGuAUCAgUuCCGCGAGG- -5'
11411 5' -54.6 NC_003085.1 + 35372 0.69 0.532553
Target:  5'- uUGGUaGACGUucucccggcggAGUcCGAGGCGCUCg -3'
miRNA:   3'- -ACCGaCUGCGua---------UCA-GUUCCGCGAGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.