miRNA display CGI


Results 1 - 20 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11419 5' -61.5 NC_003085.1 + 6992 0.66 0.416901
Target:  5'- gCCGcuucggACUCCUCacuGCCAUCaCCggcGCCCUc -3'
miRNA:   3'- gGGCa-----UGAGGAG---CGGUGG-GGa--CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 24144 0.66 0.416901
Target:  5'- gCUgGUACUCCggcuaugacgUGCUACCgaCgGCCCCa -3'
miRNA:   3'- -GGgCAUGAGGa---------GCGGUGGg-GaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 2311 0.66 0.40797
Target:  5'- gCUGgcCUgCCUCGCCACCg--GCCgCCg -3'
miRNA:   3'- gGGCauGA-GGAGCGGUGGggaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 17316 0.66 0.40797
Target:  5'- gCCGUAacccaCCgCGCCACCagCC-GCCCCc -3'
miRNA:   3'- gGGCAUga---GGaGCGGUGG--GGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 16610 0.66 0.40797
Target:  5'- uCCCGgGCggucCCgcggcgCGCgGCCUCUcggGCCCCa -3'
miRNA:   3'- -GGGCaUGa---GGa-----GCGgUGGGGA---CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 26757 0.66 0.402668
Target:  5'- aCCGgcgGCcCUUCGCCACCaaccggaugcuggaCUGCgCCa -3'
miRNA:   3'- gGGCa--UGaGGAGCGGUGGg-------------GACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 7342 0.66 0.399159
Target:  5'- gCCGUGCauUCgCUUGCCGuCCUCcGCCaCCu -3'
miRNA:   3'- gGGCAUG--AG-GAGCGGU-GGGGaCGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 26972 0.66 0.399159
Target:  5'- gUCgGUGCcgUCCgUCGCCA-CCgUGCCCUc -3'
miRNA:   3'- -GGgCAUG--AGG-AGCGGUgGGgACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 46665 0.66 0.390471
Target:  5'- gCCGagGCgCUUCGCCGCCgCCUggagcGCCgCCg -3'
miRNA:   3'- gGGCa-UGaGGAGCGGUGG-GGA-----CGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 36076 0.66 0.390471
Target:  5'- gUCCGUggccgacgaACUUCUUgacguggucaGCCACCucuCCUGCCUCg -3'
miRNA:   3'- -GGGCA---------UGAGGAG----------CGGUGG---GGACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 34138 0.66 0.390471
Target:  5'- gCCCGU-CUCa-CGCCcuACCUCUaugggcucgacGCCCCg -3'
miRNA:   3'- -GGGCAuGAGgaGCGG--UGGGGA-----------CGGGG- -5'
11419 5' -61.5 NC_003085.1 + 4035 0.66 0.390471
Target:  5'- gCCGUGa-CgaCGCCACCgC-GCCCCa -3'
miRNA:   3'- gGGCAUgaGgaGCGGUGGgGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 20231 0.66 0.373469
Target:  5'- uCCgGUACg--UCGCCACCUUcGCCCa -3'
miRNA:   3'- -GGgCAUGaggAGCGGUGGGGaCGGGg -5'
11419 5' -61.5 NC_003085.1 + 24510 0.66 0.373469
Target:  5'- gCCGUACUCCgUCGUCugguagGCCaugugCCUGUCuCCg -3'
miRNA:   3'- gGGCAUGAGG-AGCGG------UGG-----GGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 29861 0.66 0.373469
Target:  5'- aCCC--ACUCCgCGuCCuuCCCUGCCaCCu -3'
miRNA:   3'- -GGGcaUGAGGaGC-GGugGGGACGG-GG- -5'
11419 5' -61.5 NC_003085.1 + 8776 0.66 0.373469
Target:  5'- aCCCGga--CgUCGUC-CCCCUGCgCCg -3'
miRNA:   3'- -GGGCaugaGgAGCGGuGGGGACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 27807 0.66 0.373469
Target:  5'- gCCGgaUGCUgccgaaCUUCGCCuucacCCCCUGCgCCa -3'
miRNA:   3'- gGGC--AUGA------GGAGCGGu----GGGGACGgGG- -5'
11419 5' -61.5 NC_003085.1 + 31467 0.67 0.365159
Target:  5'- gUCCGcGCU-CUCGCaGCUCCgUGCCCUg -3'
miRNA:   3'- -GGGCaUGAgGAGCGgUGGGG-ACGGGG- -5'
11419 5' -61.5 NC_003085.1 + 17557 0.67 0.348925
Target:  5'- uCCCGUG--CCUCGuCCGCCUC-GUUCCg -3'
miRNA:   3'- -GGGCAUgaGGAGC-GGUGGGGaCGGGG- -5'
11419 5' -61.5 NC_003085.1 + 45771 0.67 0.341004
Target:  5'- aCCGgacgcgGCgucaggaCUCGCCGCgccguCCCUGCCuCCa -3'
miRNA:   3'- gGGCa-----UGag-----GAGCGGUG-----GGGACGG-GG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.