miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11422 5' -55.5 NC_003085.1 + 38255 0.66 0.681817
Target:  5'- cGGuuGCAcGUCAUGGCGU-GCCuuCCUUCc -3'
miRNA:   3'- -CC--CGUuCAGUACCGCAgUGGc-GGAAG- -5'
11422 5' -55.5 NC_003085.1 + 17966 0.66 0.681817
Target:  5'- uGGCGguAGUUcaGGUGUCugCGCCa-- -3'
miRNA:   3'- cCCGU--UCAGuaCCGCAGugGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 708 0.66 0.670785
Target:  5'- gGGGCAAcuccgCGUGGCGccugacgCGCCGCUc-- -3'
miRNA:   3'- -CCCGUUca---GUACCGCa------GUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 47248 0.66 0.670785
Target:  5'- uGGCGuuguGcUCA-GGCGUCACCGUCc-- -3'
miRNA:   3'- cCCGUu---C-AGUaCCGCAGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 28381 0.66 0.659715
Target:  5'- uGGCAGGaC-UGGcCGUCcuuACCGuCCUUCg -3'
miRNA:   3'- cCCGUUCaGuACC-GCAG---UGGC-GGAAG- -5'
11422 5' -55.5 NC_003085.1 + 25263 0.66 0.659715
Target:  5'- cGGGCGucGUCGUcGGCG-CGcCCGUCUa- -3'
miRNA:   3'- -CCCGUu-CAGUA-CCGCaGU-GGCGGAag -5'
11422 5' -55.5 NC_003085.1 + 21890 0.67 0.625281
Target:  5'- uGGcCGGGUCcgugcccugccagAUGGCGacgUCACCGCCg-- -3'
miRNA:   3'- cCC-GUUCAG-------------UACCGC---AGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 35118 0.67 0.604186
Target:  5'- uGGCAGGUCcgGccccuCGUCuucucCUGCCUUCg -3'
miRNA:   3'- cCCGUUCAGuaCc----GCAGu----GGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 43520 0.67 0.593114
Target:  5'- uGGCAucuGcCGcGGCGUguCCGUCUUCg -3'
miRNA:   3'- cCCGUu--CaGUaCCGCAguGGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 24440 0.67 0.593114
Target:  5'- -cGCGGGUgAUGGUGcccagCGgCGCCUUCu -3'
miRNA:   3'- ccCGUUCAgUACCGCa----GUgGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 25559 0.67 0.593114
Target:  5'- cGGGCAGaagCAggcgGGCGcggACCGCCUUUu -3'
miRNA:   3'- -CCCGUUca-GUa---CCGCag-UGGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 14917 0.67 0.571081
Target:  5'- cGGGCcGGcUgGUGGCGcUCGCgGCCg-- -3'
miRNA:   3'- -CCCGuUC-AgUACCGC-AGUGgCGGaag -5'
11422 5' -55.5 NC_003085.1 + 10027 0.68 0.549251
Target:  5'- cGGGCAA-UCAUGGUGcgggaAUCGCCUg- -3'
miRNA:   3'- -CCCGUUcAGUACCGCag---UGGCGGAag -5'
11422 5' -55.5 NC_003085.1 + 5925 0.68 0.549251
Target:  5'- -cGCAAG-C-UGGaCG-CGCCGCCUUCg -3'
miRNA:   3'- ccCGUUCaGuACC-GCaGUGGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 27929 0.68 0.549251
Target:  5'- cGGU-AGUCAcgcagGGCGUCAgCGCCg-- -3'
miRNA:   3'- cCCGuUCAGUa----CCGCAGUgGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 16466 0.68 0.538432
Target:  5'- cGGCAGuGUCcgaccuGCG-CGCCGCCUUCc -3'
miRNA:   3'- cCCGUU-CAGuac---CGCaGUGGCGGAAG- -5'
11422 5' -55.5 NC_003085.1 + 23998 0.68 0.527687
Target:  5'- ---uGAGUCgcgcaGUGGCGUCAUCGCCg-- -3'
miRNA:   3'- cccgUUCAG-----UACCGCAGUGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 38150 0.68 0.527687
Target:  5'- uGGCGuuGGUgGUGGCGcUCcCCGCCg-- -3'
miRNA:   3'- cCCGU--UCAgUACCGC-AGuGGCGGaag -5'
11422 5' -55.5 NC_003085.1 + 35697 0.69 0.484545
Target:  5'- gGGGCAGGUUgagGGCGUCaacuuugGCgGCCa-- -3'
miRNA:   3'- -CCCGUUCAGua-CCGCAG-------UGgCGGaag -5'
11422 5' -55.5 NC_003085.1 + 31482 0.69 0.471217
Target:  5'- aGGCAgugAGUCAUGGCGcagacaccugaacUACCGCCa-- -3'
miRNA:   3'- cCCGU---UCAGUACCGCa------------GUGGCGGaag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.