Results 1 - 20 of 61 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11423 | 3' | -56.2 | NC_003085.1 | + | 40605 | 1.11 | 0.000513 |
Target: 5'- gUGGAUGCCGAUGCACGUCAUGGCCGCc -3' miRNA: 3'- -ACCUACGGCUACGUGCAGUACCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 1292 | 0.77 | 0.13179 |
Target: 5'- gGGAUGCCGGaGUucuccCG-CGUGGCCGCg -3' miRNA: 3'- aCCUACGGCUaCGu----GCaGUACCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 34556 | 0.74 | 0.227207 |
Target: 5'- cUGGcgGCCGGUGCGCaacuccUCaAUGGCgGCg -3' miRNA: 3'- -ACCuaCGGCUACGUGc-----AG-UACCGgCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 1508 | 0.74 | 0.215503 |
Target: 5'- ----gGCCGGUGCGCcUCAcGGCCGCc -3' miRNA: 3'- accuaCGGCUACGUGcAGUaCCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 22565 | 0.73 | 0.265571 |
Target: 5'- -cGAUGCCGAUGacuuCACGggCGUgugGGCCGCg -3' miRNA: 3'- acCUACGGCUAC----GUGCa-GUA---CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 38246 | 0.73 | 0.265571 |
Target: 5'- uUGG--GCUGAcgguUGCACGUCAUGGCgUGCc -3' miRNA: 3'- -ACCuaCGGCU----ACGUGCAGUACCG-GCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 9073 | 0.73 | 0.251577 |
Target: 5'- uUGGAUGCCGGccaGCgccagagGCGUCAgcGCCGCg -3' miRNA: 3'- -ACCUACGGCUa--CG-------UGCAGUacCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 29769 | 0.73 | 0.272453 |
Target: 5'- -aGAUGCCGccGCGCGcCuccagGGCCGCc -3' miRNA: 3'- acCUACGGCuaCGUGCaGua---CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 36215 | 0.72 | 0.279478 |
Target: 5'- cUGGuacUGCuCGAacgucaucgaguUGCACGUCAUcGCCGCa -3' miRNA: 3'- -ACCu--ACG-GCU------------ACGUGCAGUAcCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 45741 | 0.72 | 0.29322 |
Target: 5'- cGGucAUGCUGAcgccucgcgugGCACGUCgcgcugcGUGGCCGCa -3' miRNA: 3'- aCC--UACGGCUa----------CGUGCAG-------UACCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 47635 | 0.72 | 0.286645 |
Target: 5'- aUGGA-GCCGGUGCGCuUCAacaggGGgCGCa -3' miRNA: 3'- -ACCUaCGGCUACGUGcAGUa----CCgGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 43900 | 0.72 | 0.293958 |
Target: 5'- gGGAUGUgGGUcuucaGCAUGUCcgccaaccggAUGGCCGCc -3' miRNA: 3'- aCCUACGgCUA-----CGUGCAG----------UACCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 25304 | 0.71 | 0.340876 |
Target: 5'- gUGGGgccGUCGGUaGCACGUCAUaGCCGg -3' miRNA: 3'- -ACCUa--CGGCUA-CGUGCAGUAcCGGCg -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 31422 | 0.71 | 0.349203 |
Target: 5'- gGGAaGUgGAUGCGCGUCGucuacacggaUGGCaCGUa -3' miRNA: 3'- aCCUaCGgCUACGUGCAGU----------ACCG-GCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 40960 | 0.71 | 0.348364 |
Target: 5'- ----cGCUGGUGCGCGUCGUacuggcgGGCCaGCg -3' miRNA: 3'- accuaCGGCUACGUGCAGUA-------CCGG-CG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 42759 | 0.71 | 0.340876 |
Target: 5'- aUGGGUG-CGGUGCAgGgc--GGCCGCa -3' miRNA: 3'- -ACCUACgGCUACGUgCaguaCCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 26375 | 0.71 | 0.332693 |
Target: 5'- cGGAUGCCGuUGC---UCG-GGCCGCu -3' miRNA: 3'- aCCUACGGCuACGugcAGUaCCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 19441 | 0.7 | 0.383942 |
Target: 5'- cUGGAaGCCGcgGacgACGUCGccaaGGCCGCc -3' miRNA: 3'- -ACCUaCGGCuaCg--UGCAGUa---CCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 39504 | 0.7 | 0.405858 |
Target: 5'- cGaGAaGCCGGUGCGCcucgucgcuggcaucGUCcUGGCCGUu -3' miRNA: 3'- aC-CUaCGGCUACGUG---------------CAGuACCGGCG- -5' |
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11423 | 3' | -56.2 | NC_003085.1 | + | 12022 | 0.7 | 0.383942 |
Target: 5'- cUGGcgcaccUGCCGGugcUGCGCGacuUCGUGcGCCGCu -3' miRNA: 3'- -ACCu-----ACGGCU---ACGUGC---AGUAC-CGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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