miRNA display CGI


Results 21 - 40 of 53 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 3' -56.4 NC_003085.1 + 29474 0.7 0.422788
Target:  5'- aCGACGgcGGC-AGGGCCGUacuuGGCCa -3'
miRNA:   3'- aGCUGCauCUGcUCCCGGUAcc--UCGG- -5'
11424 3' -56.4 NC_003085.1 + 27762 0.66 0.630319
Target:  5'- -gGAUGUccgAGGCGAagcGGGCCAccucguccUGGAGgCg -3'
miRNA:   3'- agCUGCA---UCUGCU---CCCGGU--------ACCUCgG- -5'
11424 3' -56.4 NC_003085.1 + 26637 0.68 0.542699
Target:  5'- cCGACGUGGcaauCGgagucGGGGCCGUcgccuccugggcgGGAGCg -3'
miRNA:   3'- aGCUGCAUCu---GC-----UCCCGGUA-------------CCUCGg -5'
11424 3' -56.4 NC_003085.1 + 25734 0.71 0.360088
Target:  5'- uUCGGCGccacGGugG-GGGCC--GGGGCCg -3'
miRNA:   3'- -AGCUGCa---UCugCuCCCGGuaCCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 25305 0.69 0.471381
Target:  5'- cCGGCcagGUGGACGAc-GCCGUGGuGGCCa -3'
miRNA:   3'- aGCUG---CAUCUGCUccCGGUACC-UCGG- -5'
11424 3' -56.4 NC_003085.1 + 25281 0.66 0.652152
Target:  5'- cUCGGCGcuggAGAUGAcguccugugGGGCCGUcGGuAGCa -3'
miRNA:   3'- -AGCUGCa---UCUGCU---------CCCGGUA-CC-UCGg -5'
11424 3' -56.4 NC_003085.1 + 25125 0.7 0.436094
Target:  5'- gUCGcCGUAGAgcgccgcggagauguCGuuGGCCAUGGuGGCCu -3'
miRNA:   3'- -AGCuGCAUCU---------------GCucCCGGUACC-UCGG- -5'
11424 3' -56.4 NC_003085.1 + 24354 0.71 0.334471
Target:  5'- aCGGCGacgGGACGGccuuuggcggccGGGCCAUcaauggccuggacGGGGCCg -3'
miRNA:   3'- aGCUGCa--UCUGCU------------CCCGGUA-------------CCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 22783 0.66 0.6194
Target:  5'- cUUGuCGUAGuCGuccuGGcacGCCGUGGAGUCg -3'
miRNA:   3'- -AGCuGCAUCuGCu---CC---CGGUACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 21557 0.67 0.597604
Target:  5'- aCGcGCGgcccGCGAGGGCCAUGacGAGUUg -3'
miRNA:   3'- aGC-UGCauc-UGCUCCCGGUAC--CUCGG- -5'
11424 3' -56.4 NC_003085.1 + 21492 0.71 0.377328
Target:  5'- gCGGCGUGGugGAcuGGuuccCCuUGGAGCCc -3'
miRNA:   3'- aGCUGCAUCugCU--CCc---GGuACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 21020 0.66 0.659781
Target:  5'- uUCGACGcGGACGGcagccgcaaucucuGGGCUuccgucccgaagGUGGgcaAGCCg -3'
miRNA:   3'- -AGCUGCaUCUGCU--------------CCCGG------------UACC---UCGG- -5'
11424 3' -56.4 NC_003085.1 + 19672 0.68 0.49877
Target:  5'- aUGGgGUGGACGAgaagcaugccgccaGGGCCAgugcgcacgaggUGGGGCg -3'
miRNA:   3'- aGCUgCAUCUGCU--------------CCCGGU------------ACCUCGg -5'
11424 3' -56.4 NC_003085.1 + 19316 0.71 0.343406
Target:  5'- gUGACGUccuGCGuGGGCUGcUGGGGCCg -3'
miRNA:   3'- aGCUGCAuc-UGCuCCCGGU-ACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 18865 0.66 0.663047
Target:  5'- uUCGGCca--GCGAaGGCUgAUGGAGCCg -3'
miRNA:   3'- -AGCUGcaucUGCUcCCGG-UACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 18353 0.66 0.630319
Target:  5'- --uACG-GGGCGGugcaGGCCGUGGAGUCg -3'
miRNA:   3'- agcUGCaUCUGCUc---CCGGUACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 18116 0.68 0.533167
Target:  5'- gUCGGCGcGGGCGGGacGGCCGgccugGGAcGUCu -3'
miRNA:   3'- -AGCUGCaUCUGCUC--CCGGUa----CCU-CGG- -5'
11424 3' -56.4 NC_003085.1 + 17185 0.67 0.575923
Target:  5'- cUGACGggAGACGAgucccGGGCCAccGAGgCCu -3'
miRNA:   3'- aGCUGCa-UCUGCU-----CCCGGUacCUC-GG- -5'
11424 3' -56.4 NC_003085.1 + 16682 0.69 0.46143
Target:  5'- gUCGACcUgcuacacgcaGGGCGGGGGCU-UGGGGCUu -3'
miRNA:   3'- -AGCUGcA----------UCUGCUCCCGGuACCUCGG- -5'
11424 3' -56.4 NC_003085.1 + 16306 0.66 0.630319
Target:  5'- -aGGCGccauGACGGGauGGCCcgGGAGUUg -3'
miRNA:   3'- agCUGCau--CUGCUC--CCGGuaCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.