miRNA display CGI


Results 21 - 40 of 169 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11424 5' -60.7 NC_003085.1 + 40485 0.67 0.37449
Target:  5'- cGGGCCGGugaaguCCGCgAgGCC-GCgGCCc -3'
miRNA:   3'- cCCCGGCUu-----GGUGgUgUGGaCGgCGG- -5'
11424 5' -60.7 NC_003085.1 + 21990 0.66 0.399609
Target:  5'- -aGGCCGAcgaggugGCCucCCGCACgaaaCUGCgCGCCc -3'
miRNA:   3'- ccCCGGCU-------UGGu-GGUGUG----GACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 31625 0.66 0.427621
Target:  5'- cGGGCaccaGcACUGCCccagGgGCCUGCCGCa -3'
miRNA:   3'- cCCCGg---CuUGGUGG----UgUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 32904 0.66 0.446299
Target:  5'- -uGGCCGGG-CGCCACGCaguuggagucGCUGCCu -3'
miRNA:   3'- ccCCGGCUUgGUGGUGUGga--------CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 22710 0.68 0.34164
Target:  5'- uGGuGGCgaaGGGCCGCCgguugagugacaGCACCggcGCCGCg -3'
miRNA:   3'- -CC-CCGg--CUUGGUGG------------UGUGGa--CGGCGg -5'
11424 5' -60.7 NC_003085.1 + 35228 0.67 0.357801
Target:  5'- aGGGGCUGuAACCggGCCcCugCUuCCGCUu -3'
miRNA:   3'- -CCCCGGC-UUGG--UGGuGugGAcGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 27859 0.66 0.400495
Target:  5'- cGGGUCGcuCgCGCCACGCaugaUGUCgGCCa -3'
miRNA:   3'- cCCCGGCuuG-GUGGUGUGg---ACGG-CGG- -5'
11424 5' -60.7 NC_003085.1 + 43510 0.66 0.446299
Target:  5'- aGGGGU-GGACUG--GCAUCUGCCGCg -3'
miRNA:   3'- -CCCCGgCUUGGUggUGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 46354 0.67 0.357801
Target:  5'- -aGGUCGAGCaucgccucaaGCCGCGCCUuCCGCg -3'
miRNA:   3'- ccCCGGCUUGg---------UGGUGUGGAcGGCGg -5'
11424 5' -60.7 NC_003085.1 + 26507 0.66 0.446299
Target:  5'- uGGGCCGGcucguCCGgCuuCGCCgucGCCGUCg -3'
miRNA:   3'- cCCCGGCUu----GGUgGu-GUGGa--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 29423 0.66 0.400495
Target:  5'- aGGGCgCGGGCgGCgGCAa-UGCCGUCc -3'
miRNA:   3'- cCCCG-GCUUGgUGgUGUggACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 39807 0.67 0.369429
Target:  5'- uGGcGGCCGucccaaucuucacagGGCCACCAgACU--CCGCCc -3'
miRNA:   3'- -CC-CCGGC---------------UUGGUGGUgUGGacGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 43225 0.66 0.418458
Target:  5'- aGGcGUCG-ACCAUgucggaGCGCCUGCCGUg -3'
miRNA:   3'- cCC-CGGCuUGGUGg-----UGUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 24294 0.66 0.427621
Target:  5'- --cGCCaccGCCACCAgGCCacgGUCGCCg -3'
miRNA:   3'- cccCGGcu-UGGUGGUgUGGa--CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 35891 0.66 0.436903
Target:  5'- cGGuGCCcacguCCACgCGCGCCuUGCuCGCCu -3'
miRNA:   3'- cCC-CGGcuu--GGUG-GUGUGG-ACG-GCGG- -5'
11424 5' -60.7 NC_003085.1 + 21768 0.66 0.443468
Target:  5'- cGGGCgGAcgcccagacgcgacAgCACCAgCACgUcGCCGCCg -3'
miRNA:   3'- cCCCGgCU--------------UgGUGGU-GUGgA-CGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 40923 0.68 0.326013
Target:  5'- cGGGGCaagucauggCGucACCGCCuuCGCCUG-CGCCc -3'
miRNA:   3'- -CCCCG---------GCu-UGGUGGu-GUGGACgGCGG- -5'
11424 5' -60.7 NC_003085.1 + 3101 0.68 0.34164
Target:  5'- -aGGCCG-ACgGCgGaugaACUUGCCGCCa -3'
miRNA:   3'- ccCCGGCuUGgUGgUg---UGGACGGCGG- -5'
11424 5' -60.7 NC_003085.1 + 38192 0.67 0.349654
Target:  5'- cGGGCCcacucugccuucGAGgugUCACCGgACUUGCCGCg -3'
miRNA:   3'- cCCCGG------------CUU---GGUGGUgUGGACGGCGg -5'
11424 5' -60.7 NC_003085.1 + 21215 0.67 0.357801
Target:  5'- -aGGUgGAGCCGucCCAagUACCgcUGCCGCCa -3'
miRNA:   3'- ccCCGgCUUGGU--GGU--GUGG--ACGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.