miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 3' -61.2 NC_003085.1 + 843 0.66 0.444396
Target:  5'- -gCGCGUCUCUcACGUCgCGCUGcccgaaGGCa -3'
miRNA:   3'- cgGCGCAGGGGuUGCAGaGCGGC------CCG- -5'
11429 3' -61.2 NC_003085.1 + 21883 0.66 0.444396
Target:  5'- gGCCGUGUCCCUccagGACuUCgcggCGCUGcGGa -3'
miRNA:   3'- -CGGCGCAGGGG----UUGcAGa---GCGGC-CCg -5'
11429 3' -61.2 NC_003085.1 + 17612 0.66 0.444396
Target:  5'- cGCCGUG-CCUUc-CGUCgcgUGCCGGaGCa -3'
miRNA:   3'- -CGGCGCaGGGGuuGCAGa--GCGGCC-CG- -5'
11429 3' -61.2 NC_003085.1 + 9082 0.66 0.444396
Target:  5'- gGCCaGCG-CCagaGGCGUCagCGCCgcGGGCa -3'
miRNA:   3'- -CGG-CGCaGGgg-UUGCAGa-GCGG--CCCG- -5'
11429 3' -61.2 NC_003085.1 + 31142 0.66 0.444396
Target:  5'- cGuuGCGgcugCCCUucgGACGgccagCGCCGGGg -3'
miRNA:   3'- -CggCGCa---GGGG---UUGCaga--GCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 18846 0.66 0.438815
Target:  5'- cGCCGCG-CUgaaguucguguucggCCAGCGaaggCUgauggaGCCGGGCg -3'
miRNA:   3'- -CGGCGCaGG---------------GGUUGCa---GAg-----CGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 48909 0.66 0.435117
Target:  5'- aGCCGCGcCgCCUcGCGccgUUCGCCaaucuccgcgaGGGCa -3'
miRNA:   3'- -CGGCGCaG-GGGuUGCa--GAGCGG-----------CCCG- -5'
11429 3' -61.2 NC_003085.1 + 19999 0.66 0.425951
Target:  5'- -aCGCG-CCC--GCGUUguugaaGCCGGGCa -3'
miRNA:   3'- cgGCGCaGGGguUGCAGag----CGGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 7763 0.66 0.425951
Target:  5'- gGCCGUGUCaUCAGCca-UCGUCGcGGCg -3'
miRNA:   3'- -CGGCGCAGgGGUUGcagAGCGGC-CCG- -5'
11429 3' -61.2 NC_003085.1 + 5122 0.66 0.425951
Target:  5'- gGCCGCccUCUCCcGCGUCgcCGCCcaGGCa -3'
miRNA:   3'- -CGGCGc-AGGGGuUGCAGa-GCGGc-CCG- -5'
11429 3' -61.2 NC_003085.1 + 18299 0.66 0.425041
Target:  5'- gGCgGUGcacgCCCCGGCG-CUgGCCguccgaaGGGCa -3'
miRNA:   3'- -CGgCGCa---GGGGUUGCaGAgCGG-------CCCG- -5'
11429 3' -61.2 NC_003085.1 + 42219 0.66 0.416901
Target:  5'- aGCC-UGUCCCCGGgcUGUC-CGUagGGGCa -3'
miRNA:   3'- -CGGcGCAGGGGUU--GCAGaGCGg-CCCG- -5'
11429 3' -61.2 NC_003085.1 + 6416 0.66 0.416901
Target:  5'- aGCCGU-UCCCCAGCGggccgCUCGacaCGGc- -3'
miRNA:   3'- -CGGCGcAGGGGUUGCa----GAGCg--GCCcg -5'
11429 3' -61.2 NC_003085.1 + 40572 0.66 0.40797
Target:  5'- gGCCGCGguggaCCCCAAgugcagcauUG-C-CGaCCGGGCg -3'
miRNA:   3'- -CGGCGCa----GGGGUU---------GCaGaGC-GGCCCG- -5'
11429 3' -61.2 NC_003085.1 + 20938 0.66 0.40797
Target:  5'- cGCCGCGgauucgCCCUGACGgUCcacCGCCugaauGGCg -3'
miRNA:   3'- -CGGCGCa-----GGGGUUGC-AGa--GCGGc----CCG- -5'
11429 3' -61.2 NC_003085.1 + 23370 0.66 0.40797
Target:  5'- aGCCGUGUCCCaggccauGCGUCaccgUGCCuuGCg -3'
miRNA:   3'- -CGGCGCAGGGgu-----UGCAGa---GCGGccCG- -5'
11429 3' -61.2 NC_003085.1 + 4049 0.66 0.40797
Target:  5'- aCCGCG-CCCCAuGC-UUUCGCUGacGGCg -3'
miRNA:   3'- cGGCGCaGGGGU-UGcAGAGCGGC--CCG- -5'
11429 3' -61.2 NC_003085.1 + 18629 0.66 0.40797
Target:  5'- aCUGCaUCCuCCgAGCGUUUCGCCGuGCc -3'
miRNA:   3'- cGGCGcAGG-GG-UUGCAGAGCGGCcCG- -5'
11429 3' -61.2 NC_003085.1 + 31935 0.66 0.407083
Target:  5'- cGCUGCGagCCCCAucccgaugaggaaGucCGUCaUUGCCGGGa -3'
miRNA:   3'- -CGGCGCa-GGGGU-------------U--GCAG-AGCGGCCCg -5'
11429 3' -61.2 NC_003085.1 + 45618 0.66 0.400034
Target:  5'- cGCCGUgGUCCUgGAUGggcagugcgggaaugCUCGCCGuGCa -3'
miRNA:   3'- -CGGCG-CAGGGgUUGCa--------------GAGCGGCcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.