Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11429 | 3' | -61.2 | NC_003085.1 | + | 30748 | 0.71 | 0.189414 |
Target: 5'- aGgCGCGUCCCgucuCGUCagGCgGGGCg -3' miRNA: 3'- -CgGCGCAGGGguu-GCAGagCGgCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 29927 | 0.68 | 0.325554 |
Target: 5'- uCCGCGUCgggCGcCGUC-CGCUGGGCu -3' miRNA: 3'- cGGCGCAGgg-GUuGCAGaGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 29652 | 0.68 | 0.333213 |
Target: 5'- cGCCGCcUgCCCAcagaaGUCaUGUCGGGCg -3' miRNA: 3'- -CGGCGcAgGGGUug---CAGaGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 29524 | 0.77 | 0.076378 |
Target: 5'- -gCGCGUCaCCAGCGUCUUGgCgCGGGCg -3' miRNA: 3'- cgGCGCAGgGGUUGCAGAGC-G-GCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 28996 | 0.68 | 0.325554 |
Target: 5'- cCUGCGugugccacuUCUCCAGCGgCUCGCgCGcGGCg -3' miRNA: 3'- cGGCGC---------AGGGGUUGCaGAGCG-GC-CCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 26888 | 0.67 | 0.365159 |
Target: 5'- cGCCgGUGgguggaCUCAAcacCGUCUCGgCGGGCa -3' miRNA: 3'- -CGG-CGCag----GGGUU---GCAGAGCgGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 26024 | 0.7 | 0.249934 |
Target: 5'- -aUGCGUCCCUgcuGCGcCU-GCUGGGCg -3' miRNA: 3'- cgGCGCAGGGGu--UGCaGAgCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 25986 | 0.68 | 0.318026 |
Target: 5'- uGCUGaCGaaugCCUCGACG-CUgCGCUGGGCc -3' miRNA: 3'- -CGGC-GCa---GGGGUUGCaGA-GCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 25888 | 0.67 | 0.373469 |
Target: 5'- -aCGCGUCCuCCAGCGacaUCgcaaCGCCGcGCc -3' miRNA: 3'- cgGCGCAGG-GGUUGC---AGa---GCGGCcCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 25402 | 0.71 | 0.189414 |
Target: 5'- aGCCGCGgcUUCCC-GCGcUUCGCCaGGCg -3' miRNA: 3'- -CGGCGC--AGGGGuUGCaGAGCGGcCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 23680 | 0.67 | 0.365159 |
Target: 5'- aGCgGCGUCCCCAccugcACGUCggacUUGCCc-GCg -3' miRNA: 3'- -CGgCGCAGGGGU-----UGCAG----AGCGGccCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 23370 | 0.66 | 0.40797 |
Target: 5'- aGCCGUGUCCCaggccauGCGUCaccgUGCCuuGCg -3' miRNA: 3'- -CGGCGCAGGGgu-----UGCAGa---GCGGccCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 21883 | 0.66 | 0.444396 |
Target: 5'- gGCCGUGUCCCUccagGACuUCgcggCGCUGcGGa -3' miRNA: 3'- -CGGCGCAGGGG----UUGcAGa---GCGGC-CCg -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 21427 | 0.67 | 0.37013 |
Target: 5'- gGCCGCGcagaacgaccucaUCCCCGuggagaacuggcugACG-UUCGCCgacaaGGGCg -3' miRNA: 3'- -CGGCGC-------------AGGGGU--------------UGCaGAGCGG-----CCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 20938 | 0.66 | 0.40797 |
Target: 5'- cGCCGCGgauucgCCCUGACGgUCcacCGCCugaauGGCg -3' miRNA: 3'- -CGGCGCa-----GGGGUUGC-AGa--GCGGc----CCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 20357 | 0.77 | 0.070327 |
Target: 5'- cGCCGCGUCgCCGcUG-CUgaCGCCGGGCa -3' miRNA: 3'- -CGGCGCAGgGGUuGCaGA--GCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 20068 | 0.75 | 0.100073 |
Target: 5'- gGCCGCGcuggcgcagcaacUCCgCCAugGCGUUcUGCCGGGCg -3' miRNA: 3'- -CGGCGC-------------AGG-GGU--UGCAGaGCGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 19999 | 0.66 | 0.425951 |
Target: 5'- -aCGCG-CCC--GCGUUguugaaGCCGGGCa -3' miRNA: 3'- cgGCGCaGGGguUGCAGag----CGGCCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 19477 | 0.67 | 0.348925 |
Target: 5'- gGCCGC-UCCCCAucCGguggaugacugCUUGCCggaGGGCu -3' miRNA: 3'- -CGGCGcAGGGGUu-GCa----------GAGCGG---CCCG- -5' |
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11429 | 3' | -61.2 | NC_003085.1 | + | 19117 | 0.73 | 0.138445 |
Target: 5'- cGCCGCagugcgCCCCGcgacaGCGUC-CGCCaGGGCc -3' miRNA: 3'- -CGGCGca----GGGGU-----UGCAGaGCGG-CCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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