miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11429 5' -52.5 NC_003085.1 + 13806 0.66 0.832377
Target:  5'- -cAGUCugcgUGgagguGGCGCCAugACGUGCAg -3'
miRNA:   3'- guUCAGua--GC-----UCGUGGUugUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 29667 0.66 0.832377
Target:  5'- gAAGUCAugUCGGGCGuCCAccuCGCGaCGUg -3'
miRNA:   3'- gUUCAGU--AGCUCGU-GGUu--GUGC-GCGu -5'
11429 5' -52.5 NC_003085.1 + 7494 0.66 0.810494
Target:  5'- aCGGGcguccgCGUCGAGCgguugcaggacaucACCGACgaggACGCGCGg -3'
miRNA:   3'- -GUUCa-----GUAGCUCG--------------UGGUUG----UGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 46279 0.66 0.803617
Target:  5'- uGAGUCGUCGAGUGCC--CAUGUcaGCc -3'
miRNA:   3'- gUUCAGUAGCUCGUGGuuGUGCG--CGu -5'
11429 5' -52.5 NC_003085.1 + 9522 0.66 0.793631
Target:  5'- gCGGGUCAUCG-GCucCCugguaguGCACGaCGCGg -3'
miRNA:   3'- -GUUCAGUAGCuCGu-GGu------UGUGC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 21536 0.66 0.793631
Target:  5'- gCAAGUCc-CG-GUACCGGaacCACGCGCGg -3'
miRNA:   3'- -GUUCAGuaGCuCGUGGUU---GUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 44030 0.67 0.782439
Target:  5'- -cGGUCAUccaugacCGAGCGCagCGugACGCGCc -3'
miRNA:   3'- guUCAGUA-------GCUCGUG--GUugUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 36230 0.67 0.77313
Target:  5'- --cGUCAUCGAGUugCAcguCAuCGcCGCAc -3'
miRNA:   3'- guuCAGUAGCUCGugGUu--GU-GC-GCGU- -5'
11429 5' -52.5 NC_003085.1 + 44189 0.67 0.77313
Target:  5'- cCAGGgcguccCGUCGcGCACCcacCACGCGCc -3'
miRNA:   3'- -GUUCa-----GUAGCuCGUGGuu-GUGCGCGu -5'
11429 5' -52.5 NC_003085.1 + 31059 0.67 0.761583
Target:  5'- -cAGUCGcuucgccUCGGggugcGCACCcucaGGCACGCGCAg -3'
miRNA:   3'- guUCAGU-------AGCU-----CGUGG----UUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 40927 0.67 0.74879
Target:  5'- gCAAGUCAuggcgucaccgccuUCGccuGCGCCcGCugGUGCGc -3'
miRNA:   3'- -GUUCAGU--------------AGCu--CGUGGuUGugCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 12490 0.67 0.741243
Target:  5'- gGAGUCGaagCG-GCGCCAACAUGgcccCGCGg -3'
miRNA:   3'- gUUCAGUa--GCuCGUGGUUGUGC----GCGU- -5'
11429 5' -52.5 NC_003085.1 + 28047 0.67 0.741243
Target:  5'- --uGUCGgagcCGAGCGCCuuCACGCcaguGCAg -3'
miRNA:   3'- guuCAGUa---GCUCGUGGuuGUGCG----CGU- -5'
11429 5' -52.5 NC_003085.1 + 12456 0.68 0.730361
Target:  5'- aAGGUCAgcgcUgGGGCGCCAGCA-GUGCc -3'
miRNA:   3'- gUUCAGU----AgCUCGUGGUUGUgCGCGu -5'
11429 5' -52.5 NC_003085.1 + 21315 0.68 0.730361
Target:  5'- aCAAGgaaAUCGAccuCGUCAGCACGCGCAu -3'
miRNA:   3'- -GUUCag-UAGCUc--GUGGUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 2716 0.68 0.719374
Target:  5'- gCGAGgacuUCGGGCGgcuggCAGCGCGCGCGa -3'
miRNA:   3'- -GUUCagu-AGCUCGUg----GUUGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 37429 0.68 0.708294
Target:  5'- -cAGUgCGgcuagCGAGCGCCAACccCGCGCc -3'
miRNA:   3'- guUCA-GUa----GCUCGUGGUUGu-GCGCGu -5'
11429 5' -52.5 NC_003085.1 + 38511 0.68 0.674626
Target:  5'- cCAGGgCA-CGAGCGCauuCAUGCGCAa -3'
miRNA:   3'- -GUUCaGUaGCUCGUGguuGUGCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 8507 0.69 0.663301
Target:  5'- -cAGUaCGaCGcGCACCAGCGgGCGCAg -3'
miRNA:   3'- guUCA-GUaGCuCGUGGUUGUgCGCGU- -5'
11429 5' -52.5 NC_003085.1 + 33241 0.69 0.659897
Target:  5'- uGAGcCGUUGAGC-CCGGCaguauucaguccucGCGCGCGa -3'
miRNA:   3'- gUUCaGUAGCUCGuGGUUG--------------UGCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.