miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 5152 0.76 0.045263
Target:  5'- aGGCCGACGCGaaggcagcggccauCCUGGcgcggaaggcAGgGCGGCGCCg -3'
miRNA:   3'- -UCGGCUGUGC--------------GGGCC----------UCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 5219 0.7 0.137785
Target:  5'- gAGCgCGACGCgGCCCGGcAGgaaGCGGCcuCCa -3'
miRNA:   3'- -UCG-GCUGUG-CGGGCC-UCg--CGCCGc-GG- -5'
11432 3' -64.9 NC_003085.1 + 5518 0.66 0.277702
Target:  5'- cGUCGGCACGUgcucgcaCUGGuGCGCGaaguGCGCg -3'
miRNA:   3'- uCGGCUGUGCG-------GGCCuCGCGC----CGCGg -5'
11432 3' -64.9 NC_003085.1 + 5888 0.72 0.095106
Target:  5'- uGCCGugGCGCCgGGucgguGaCGCGG-GCCu -3'
miRNA:   3'- uCGGCugUGCGGgCCu----C-GCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 6019 0.74 0.070687
Target:  5'- cGCgGAUguACGCCCGGA-CGCcGCGCCa -3'
miRNA:   3'- uCGgCUG--UGCGGGCCUcGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 6671 0.66 0.271796
Target:  5'- cGUgGACGCcucccugaugGCCCuGGAGCggcuuGCGGcCGCCc -3'
miRNA:   3'- uCGgCUGUG----------CGGG-CCUCG-----CGCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 6744 0.68 0.202443
Target:  5'- uGGuCCGAC-UGCCCGGccUGCcGCGCCg -3'
miRNA:   3'- -UC-GGCUGuGCGGGCCucGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7251 0.66 0.246764
Target:  5'- cAGCCcgggGACAgGCUCugggugaaGGAGaCGUGGCGCa -3'
miRNA:   3'- -UCGG----CUGUgCGGG--------CCUC-GCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 7460 0.68 0.192499
Target:  5'- uGCCGACGcCGCCgGGgcaggaacacGGCGaGGCGUg -3'
miRNA:   3'- uCGGCUGU-GCGGgCC----------UCGCgCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 7554 0.67 0.223672
Target:  5'- gGGCU-ACACGCCCgagaaugcgcuGGAGuCGCuGCGUCa -3'
miRNA:   3'- -UCGGcUGUGCGGG-----------CCUC-GCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7616 0.69 0.17389
Target:  5'- aGGUgGACcaGCGCCgggcgggacucaUGGGGCgcuuggGCGGCGCCg -3'
miRNA:   3'- -UCGgCUG--UGCGG------------GCCUCG------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 8657 0.7 0.127365
Target:  5'- cGGCCggGACGCGCgUGGccuugGGCGCcggGGUGCCg -3'
miRNA:   3'- -UCGG--CUGUGCGgGCC-----UCGCG---CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 8796 0.72 0.097686
Target:  5'- cGCCGGCGgcucCGCgaGGuuGCGCGGCGCa -3'
miRNA:   3'- uCGGCUGU----GCGggCCu-CGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 8975 0.69 0.173003
Target:  5'- cGGCuCGAgACGCCCgccagcagcgacaGGAGUcccaccaGUGGCGCUa -3'
miRNA:   3'- -UCG-GCUgUGCGGG-------------CCUCG-------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 9078 0.67 0.229267
Target:  5'- uGCCGGCcaGCGCCaGaGGCGuCaGCGCCg -3'
miRNA:   3'- uCGGCUG--UGCGGgCcUCGC-GcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 9170 0.66 0.271796
Target:  5'- aGGgCGACGCuGCCCaG-GC-CGGCGCa -3'
miRNA:   3'- -UCgGCUGUG-CGGGcCuCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 9690 0.66 0.252837
Target:  5'- -aCCGGCugGCgucccugcagaCUGGAGCGCcGGaaCGCCu -3'
miRNA:   3'- ucGGCUGugCG-----------GGCCUCGCG-CC--GCGG- -5'
11432 3' -64.9 NC_003085.1 + 10056 0.67 0.2123
Target:  5'- aGGCUgGAUACgaGCCUGGAgGCGaagagguUGGCGCCg -3'
miRNA:   3'- -UCGG-CUGUG--CGGGCCU-CGC-------GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 10479 0.71 0.117677
Target:  5'- cGGCUGGC-CGaCCUGcuGCGCGGCGCa -3'
miRNA:   3'- -UCGGCUGuGC-GGGCcuCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 10617 0.67 0.229267
Target:  5'- uGGCCaauGCACcUCCGGcuguGUGgGGCGCCg -3'
miRNA:   3'- -UCGGc--UGUGcGGGCCu---CGCgCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.