miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11437 3' -60.1 NC_003085.1 + 18634 0.66 0.456078
Target:  5'- gUUGCU-GCugGGUugCCUUGuCGcCCGCg -3'
miRNA:   3'- -AGUGAgUGugCCGugGGGAC-GC-GGCG- -5'
11437 3' -60.1 NC_003085.1 + 3473 0.66 0.456078
Target:  5'- gCAC-CAuCACGGCgACgUCUGCGUCGa -3'
miRNA:   3'- aGUGaGU-GUGCCG-UGgGGACGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 31139 0.66 0.446463
Target:  5'- gCGCgu-UGCGGCugCCCUucggacggccaGCGCCGg -3'
miRNA:   3'- aGUGaguGUGCCGugGGGA-----------CGCGGCg -5'
11437 3' -60.1 NC_003085.1 + 33921 0.66 0.446463
Target:  5'- -aACUggagUACugGGCucaACCgCCUGCGCCa- -3'
miRNA:   3'- agUGA----GUGugCCG---UGG-GGACGCGGcg -5'
11437 3' -60.1 NC_003085.1 + 27920 0.66 0.446463
Target:  5'- -aGCUCGCGcCGGUagucacgcaggGCgUCaGCGCCGCg -3'
miRNA:   3'- agUGAGUGU-GCCG-----------UGgGGaCGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 10127 0.66 0.446463
Target:  5'- -uGCUCGCAgCGGacUACCgcgaaCUGCGCgGCg -3'
miRNA:   3'- agUGAGUGU-GCC--GUGGg----GACGCGgCG- -5'
11437 3' -60.1 NC_003085.1 + 13278 0.66 0.446463
Target:  5'- gCGCUcCGCACGGCgaacaucggagGCCCCaGCGa-GCc -3'
miRNA:   3'- aGUGA-GUGUGCCG-----------UGGGGaCGCggCG- -5'
11437 3' -60.1 NC_003085.1 + 20079 0.66 0.446463
Target:  5'- cCGCUUcCACGcGCGCUgUgacGUGCCGCa -3'
miRNA:   3'- aGUGAGuGUGC-CGUGGgGa--CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 30660 0.66 0.436962
Target:  5'- gUCGCUgcgGCAgGGCG-CUCUGCGCCucGCa -3'
miRNA:   3'- -AGUGAg--UGUgCCGUgGGGACGCGG--CG- -5'
11437 3' -60.1 NC_003085.1 + 6001 0.66 0.436018
Target:  5'- -gGCUCGCcuACGGCugggcgcggauguACgCCCgGaCGCCGCg -3'
miRNA:   3'- agUGAGUG--UGCCG-------------UG-GGGaC-GCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 18735 0.66 0.436018
Target:  5'- uUCuuCUCGUugGGaCGccgguccgcuuccCCCUUGCGCCGCu -3'
miRNA:   3'- -AGu-GAGUGugCC-GU-------------GGGGACGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 15355 0.66 0.427578
Target:  5'- -aACUgCAUGCGGUGgCCCUGaCGCCa- -3'
miRNA:   3'- agUGA-GUGUGCCGUgGGGAC-GCGGcg -5'
11437 3' -60.1 NC_003085.1 + 23083 0.66 0.425716
Target:  5'- gCGCUCAgcggcccgagcaACGGCAUCCgCUGCG-UGCg -3'
miRNA:   3'- aGUGAGUg-----------UGCCGUGGG-GACGCgGCG- -5'
11437 3' -60.1 NC_003085.1 + 26003 0.66 0.422006
Target:  5'- aCGCUgCGCugGGC-CUCCgucaugcgucccugcUGCGCCuGCu -3'
miRNA:   3'- aGUGA-GUGugCCGuGGGG---------------ACGCGG-CG- -5'
11437 3' -60.1 NC_003085.1 + 26591 0.66 0.418315
Target:  5'- -gGCUC-CuCGGUACCaCCUguggGCGCUGCc -3'
miRNA:   3'- agUGAGuGuGCCGUGG-GGA----CGCGGCG- -5'
11437 3' -60.1 NC_003085.1 + 27360 0.66 0.418315
Target:  5'- -gGCUCuGCugGGCggccuGCUUCUGCGCCu- -3'
miRNA:   3'- agUGAG-UGugCCG-----UGGGGACGCGGcg -5'
11437 3' -60.1 NC_003085.1 + 41811 0.66 0.418315
Target:  5'- -gGCUCGCGCaugucGGCGCCgCCcaaGCGCCcCa -3'
miRNA:   3'- agUGAGUGUG-----CCGUGG-GGa--CGCGGcG- -5'
11437 3' -60.1 NC_003085.1 + 48760 0.66 0.418315
Target:  5'- gCGC-CACGCGGaguuGCCCCguggcgacugGCGgCGCu -3'
miRNA:   3'- aGUGaGUGUGCCg---UGGGGa---------CGCgGCG- -5'
11437 3' -60.1 NC_003085.1 + 10454 0.66 0.418315
Target:  5'- -gGCUC-CGCGGCGCUUUgGCGCCc- -3'
miRNA:   3'- agUGAGuGUGCCGUGGGGaCGCGGcg -5'
11437 3' -60.1 NC_003085.1 + 9188 0.66 0.409175
Target:  5'- -gGgUCgGCGCgGGUACUCCUGCGCCc- -3'
miRNA:   3'- agUgAG-UGUG-CCGUGGGGACGCGGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.