miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11439 3' -52.2 NC_003085.1 + 15879 0.66 0.857325
Target:  5'- cGCuUCAuGCCACcGcuUCgGCAACAUGuCGCc -3'
miRNA:   3'- -CG-AGU-CGGUGaC--AG-CGUUGUACuGCG- -5'
11439 3' -52.2 NC_003085.1 + 29276 0.66 0.857325
Target:  5'- aUUCGGCCAgcagCGCAAC--GACGCg -3'
miRNA:   3'- cGAGUCGGUgacaGCGUUGuaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 30726 0.66 0.848635
Target:  5'- gGCuUCGGCaUGCUG-CGCAGgAaGGCGCg -3'
miRNA:   3'- -CG-AGUCG-GUGACaGCGUUgUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 46617 0.66 0.848635
Target:  5'- gGCUCAGCCcuccucgcccgGCUGcCG-GGCA-GACGUg -3'
miRNA:   3'- -CGAGUCGG-----------UGACaGCgUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 23562 0.66 0.848635
Target:  5'- uGCUCGG-CGCggcGUUGCGAUGUcgcuggagGACGCg -3'
miRNA:   3'- -CGAGUCgGUGa--CAGCGUUGUA--------CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 34254 0.66 0.839704
Target:  5'- cCUCGcCCACUucCGCGGCGcGGCGCu -3'
miRNA:   3'- cGAGUcGGUGAcaGCGUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 13210 0.66 0.839704
Target:  5'- --aCGGUCGCUGggaacggggUGCGGCgAUGACGUg -3'
miRNA:   3'- cgaGUCGGUGACa--------GCGUUG-UACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 22312 0.66 0.839704
Target:  5'- -aUCAGCCagGCUGccCGCGcCAUGAaucCGCa -3'
miRNA:   3'- cgAGUCGG--UGACa-GCGUuGUACU---GCG- -5'
11439 3' -52.2 NC_003085.1 + 5143 0.66 0.830542
Target:  5'- cGCcCAGgCAUccaUGUCGCAACAccuCGCg -3'
miRNA:   3'- -CGaGUCgGUG---ACAGCGUUGUacuGCG- -5'
11439 3' -52.2 NC_003085.1 + 2323 0.66 0.830542
Target:  5'- cGCcacCGGCCGCcgcuucaucgGUUGCGACAUccgggaGGCGCa -3'
miRNA:   3'- -CGa--GUCGGUGa---------CAGCGUUGUA------CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 14894 0.66 0.830542
Target:  5'- uGUUCGccGCCAUUGaggaguugCGCAccggccgccagcGCGUGGCGCu -3'
miRNA:   3'- -CGAGU--CGGUGACa-------GCGU------------UGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 45466 0.66 0.830542
Target:  5'- cGCUCAuCCAgUcGUCGUuguccuuCGUGAUGCa -3'
miRNA:   3'- -CGAGUcGGUgA-CAGCGuu-----GUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 8632 0.66 0.821157
Target:  5'- aGCcCGGCCGCcGUCaGguACAggccggccggGACGCg -3'
miRNA:   3'- -CGaGUCGGUGaCAG-CguUGUa---------CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 43163 0.66 0.821157
Target:  5'- cGCUCGGCCuGCUccaGUCGCucCAccgccGCGCg -3'
miRNA:   3'- -CGAGUCGG-UGA---CAGCGuuGUac---UGCG- -5'
11439 3' -52.2 NC_003085.1 + 41357 0.67 0.811562
Target:  5'- -aUCAGCgcccaACU-UCGCGGCGUGAUGUu -3'
miRNA:   3'- cgAGUCGg----UGAcAGCGUUGUACUGCG- -5'
11439 3' -52.2 NC_003085.1 + 27246 0.67 0.811562
Target:  5'- uCUCAGCCuggaUG-CGCAGCAgGuCGCc -3'
miRNA:   3'- cGAGUCGGug--ACaGCGUUGUaCuGCG- -5'
11439 3' -52.2 NC_003085.1 + 35481 0.67 0.811562
Target:  5'- cGCUCGGuCCAaccgaGCAACG-GGCGCu -3'
miRNA:   3'- -CGAGUC-GGUgacagCGUUGUaCUGCG- -5'
11439 3' -52.2 NC_003085.1 + 26429 0.67 0.811562
Target:  5'- aGCUUcGcCCACUGcUCGCGAaccucugGGCGCc -3'
miRNA:   3'- -CGAGuC-GGUGAC-AGCGUUgua----CUGCG- -5'
11439 3' -52.2 NC_003085.1 + 8182 0.67 0.811562
Target:  5'- ---gAGCCGCUGggCGCuguGCAUGGCccGCc -3'
miRNA:   3'- cgagUCGGUGACa-GCGu--UGUACUG--CG- -5'
11439 3' -52.2 NC_003085.1 + 11487 0.67 0.811562
Target:  5'- ----cGCCGCaGaCGCuGACAUGGCGCa -3'
miRNA:   3'- cgaguCGGUGaCaGCG-UUGUACUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.