Results 21 - 40 of 69 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11439 | 3' | -52.2 | NC_003085.1 | + | 35254 | 0.68 | 0.728596 |
Target: 5'- cGCUU-GCgCGCgggcuUGUCGCAGCccgGACGCu -3' miRNA: 3'- -CGAGuCG-GUG-----ACAGCGUUGua-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 35142 | 0.7 | 0.593761 |
Target: 5'- -gUgGGCCgGCUGcCGCAACAUGA-GCg -3' miRNA: 3'- cgAgUCGG-UGACaGCGUUGUACUgCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 34254 | 0.66 | 0.839704 |
Target: 5'- cCUCGcCCACUucCGCGGCGcGGCGCu -3' miRNA: 3'- cGAGUcGGUGAcaGCGUUGUaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 34205 | 0.75 | 0.33996 |
Target: 5'- aGCUCGGCCGCggccuccggGUCGUccucccaGAguUGGCGCa -3' miRNA: 3'- -CGAGUCGGUGa--------CAGCG-------UUguACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 34163 | 0.67 | 0.801767 |
Target: 5'- gGCUCGacGCCcCgggC-CAGCAUGACGCg -3' miRNA: 3'- -CGAGU--CGGuGacaGcGUUGUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 34103 | 0.69 | 0.684256 |
Target: 5'- cGCgUCuGCCACUGgUGCAGgGUGuuGCg -3' miRNA: 3'- -CG-AGuCGGUGACaGCGUUgUACugCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 33385 | 1.14 | 0.000822 |
Target: 5'- cGCUCAGCCACUGUCGCAACAUGACGCc -3' miRNA: 3'- -CGAGUCGGUGACAGCGUUGUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 32812 | 0.74 | 0.394335 |
Target: 5'- aGUgaagCAGCgGCUGUCGCGACugauUGGgGCc -3' miRNA: 3'- -CGa---GUCGgUGACAGCGUUGu---ACUgCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 32168 | 0.72 | 0.49466 |
Target: 5'- gGCgUCGGCCagGCUG-CGCcaGugGUGGCGCg -3' miRNA: 3'- -CG-AGUCGG--UGACaGCG--UugUACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 30726 | 0.66 | 0.848635 |
Target: 5'- gGCuUCGGCaUGCUG-CGCAGgAaGGCGCg -3' miRNA: 3'- -CG-AGUCG-GUGACaGCGUUgUaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 29848 | 0.74 | 0.413348 |
Target: 5'- cUUCGauGCC-CUGUUGCAGCAgaUGACGCc -3' miRNA: 3'- cGAGU--CGGuGACAGCGUUGU--ACUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 29276 | 0.66 | 0.857325 |
Target: 5'- aUUCGGCCAgcagCGCAAC--GACGCg -3' miRNA: 3'- cGAGUCGGUgacaGCGUUGuaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 28796 | 0.68 | 0.717633 |
Target: 5'- --gCAGCCGCUccaGCAACuccGACGCg -3' miRNA: 3'- cgaGUCGGUGAcagCGUUGua-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 27246 | 0.67 | 0.811562 |
Target: 5'- uCUCAGCCuggaUG-CGCAGCAgGuCGCc -3' miRNA: 3'- cGAGUCGGug--ACaGCGUUGUaCuGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 26429 | 0.67 | 0.811562 |
Target: 5'- aGCUUcGcCCACUGcUCGCGAaccucugGGCGCc -3' miRNA: 3'- -CGAGuC-GGUGAC-AGCGUUgua----CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 26230 | 0.69 | 0.673008 |
Target: 5'- cCUCGGCCAggauaUGgugCGCGACuaccagugGACGCa -3' miRNA: 3'- cGAGUCGGUg----ACa--GCGUUGua------CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 24804 | 0.74 | 0.403771 |
Target: 5'- cGCUCAGCC-C-GUCGCGGC---GCGCg -3' miRNA: 3'- -CGAGUCGGuGaCAGCGUUGuacUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 24261 | 0.68 | 0.739456 |
Target: 5'- --cCAGCCguACUGcUCgGCGACGUuGGCGCu -3' miRNA: 3'- cgaGUCGG--UGAC-AG-CGUUGUA-CUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 24045 | 0.77 | 0.277934 |
Target: 5'- uGCUCAGCCGUUGcCGUugagGGCcgGACGCg -3' miRNA: 3'- -CGAGUCGGUGACaGCG----UUGuaCUGCG- -5' |
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11439 | 3' | -52.2 | NC_003085.1 | + | 23562 | 0.66 | 0.848635 |
Target: 5'- uGCUCGG-CGCggcGUUGCGAUGUcgcuggagGACGCg -3' miRNA: 3'- -CGAGUCgGUGa--CAGCGUUGUA--------CUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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