miRNA display CGI


Results 1 - 20 of 76 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11441 5' -58.6 NC_003085.1 + 37343 0.66 0.553779
Target:  5'- uCGGCACCgaaggCCUCGGgGgCGUCcgacuuGCg -3'
miRNA:   3'- -GCUGUGGgaa--GGAGCCgCgGCAGu-----CG- -5'
11441 5' -58.6 NC_003085.1 + 14629 0.66 0.553779
Target:  5'- uGACGCCU--UCUUGacGCGCUcgGUCAGCg -3'
miRNA:   3'- gCUGUGGGaaGGAGC--CGCGG--CAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 24885 0.66 0.553779
Target:  5'- gCGGCGCCCagUUCCagGGCcgccucaucGCCGaguaaCAGCg -3'
miRNA:   3'- -GCUGUGGG--AAGGagCCG---------CGGCa----GUCG- -5'
11441 5' -58.6 NC_003085.1 + 48142 0.66 0.553779
Target:  5'- gGGCugCCUccUCCagcgCGGCGUCGcgcUCAcGCu -3'
miRNA:   3'- gCUGugGGA--AGGa---GCCGCGGC---AGU-CG- -5'
11441 5' -58.6 NC_003085.1 + 26376 0.66 0.553779
Target:  5'- gGAUGCCgUUgCUCGG-GCCGcUgAGCg -3'
miRNA:   3'- gCUGUGGgAAgGAGCCgCGGC-AgUCG- -5'
11441 5' -58.6 NC_003085.1 + 24456 0.66 0.553779
Target:  5'- uGugGCCCUUCU--GGCGCuCG-CAGg -3'
miRNA:   3'- gCugUGGGAAGGagCCGCG-GCaGUCg -5'
11441 5' -58.6 NC_003085.1 + 7445 0.66 0.543282
Target:  5'- aGGCGCCCUcgUCCgugcCGaCGCCGcCGGg -3'
miRNA:   3'- gCUGUGGGA--AGGa---GCcGCGGCaGUCg -5'
11441 5' -58.6 NC_003085.1 + 15826 0.66 0.542236
Target:  5'- cCGugGCCCUcuucgCCUguggUGGCccagacuucgaagGCCGUUGGCg -3'
miRNA:   3'- -GCugUGGGAa----GGA----GCCG-------------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 20825 0.66 0.532852
Target:  5'- gGACGCCa-UCCUggaugaggcgacCGGCGCCG--AGCu -3'
miRNA:   3'- gCUGUGGgaAGGA------------GCCGCGGCagUCG- -5'
11441 5' -58.6 NC_003085.1 + 20809 0.66 0.531812
Target:  5'- gGACGCCCUUCCcCgccuccaggaaggGGUaucgaaagGCCGgccgCAGCa -3'
miRNA:   3'- gCUGUGGGAAGGaG-------------CCG--------CGGCa---GUCG- -5'
11441 5' -58.6 NC_003085.1 + 26697 0.66 0.512214
Target:  5'- cCGuCGCCa--CCgcggCgGGCGUCGUCGGCg -3'
miRNA:   3'- -GCuGUGGgaaGGa---G-CCGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 24214 0.66 0.504051
Target:  5'- aCGACGCCCgccgcggagcgcaCCagggCGGCGCCGgugaugagguacCAGCc -3'
miRNA:   3'- -GCUGUGGGaa-----------GGa---GCCGCGGCa-----------GUCG- -5'
11441 5' -58.6 NC_003085.1 + 8535 0.66 0.502019
Target:  5'- aGGCACCU---CUCGGCGCg--CGGCg -3'
miRNA:   3'- gCUGUGGGaagGAGCCGCGgcaGUCG- -5'
11441 5' -58.6 NC_003085.1 + 24074 0.66 0.501004
Target:  5'- gCGACAUCUggaCgaCGGUgaagcccGCCGUCGGCg -3'
miRNA:   3'- -GCUGUGGGaa-GgaGCCG-------CGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 42068 0.67 0.481903
Target:  5'- gGACucguGCCagUUCacgCgGGCGCCGUCGGCc -3'
miRNA:   3'- gCUG----UGGg-AAGga-G-CCGCGGCAGUCG- -5'
11441 5' -58.6 NC_003085.1 + 5880 0.67 0.481903
Target:  5'- gCGAC-CUCUgCCgUGGCGCCGggUCGGUg -3'
miRNA:   3'- -GCUGuGGGAaGGaGCCGCGGC--AGUCG- -5'
11441 5' -58.6 NC_003085.1 + 7019 0.67 0.481903
Target:  5'- cCGGCGCCCUcaaggcCCUCGcGCGggGUgGGCg -3'
miRNA:   3'- -GCUGUGGGAa-----GGAGC-CGCggCAgUCG- -5'
11441 5' -58.6 NC_003085.1 + 46064 0.67 0.481903
Target:  5'- -uGCACCCgccCUUCGGCGCUcaGUC-GCc -3'
miRNA:   3'- gcUGUGGGaa-GGAGCCGCGG--CAGuCG- -5'
11441 5' -58.6 NC_003085.1 + 44431 0.67 0.471993
Target:  5'- -aGCGCCaCcUCCUCgGGCGUCGUCGu- -3'
miRNA:   3'- gcUGUGG-GaAGGAG-CCGCGGCAGUcg -5'
11441 5' -58.6 NC_003085.1 + 38346 0.67 0.462186
Target:  5'- uGGCACgcgcaaCUUCCUgGGCacgaauGCCGcCGGCg -3'
miRNA:   3'- gCUGUGg-----GAAGGAgCCG------CGGCaGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.