Results 1 - 20 of 76 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11441 | 5' | -58.6 | NC_003085.1 | + | 32960 | 1.12 | 0.000284 |
Target: 5'- cCGACACCCUUCCUCGGCGCCGUCAGCg -3' miRNA: 3'- -GCUGUGGGAAGGAGCCGCGGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 41810 | 0.76 | 0.116813 |
Target: 5'- uCGugGCCCaggaCUCGGCGCCGUUgauGCg -3' miRNA: 3'- -GCugUGGGaag-GAGCCGCGGCAGu--CG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 10654 | 0.74 | 0.161738 |
Target: 5'- aGGCAgCCaaagUCCUCGGgGCUGcCGGCg -3' miRNA: 3'- gCUGUgGGa---AGGAGCCgCGGCaGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 45670 | 0.74 | 0.161738 |
Target: 5'- cCGuCGCCg--CUUCGGCGuCCGUCAGCc -3' miRNA: 3'- -GCuGUGGgaaGGAGCCGC-GGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 41987 | 0.74 | 0.166114 |
Target: 5'- uGACACgCCUcgccguguUCCUgcccCGGCGgCGUCGGCa -3' miRNA: 3'- gCUGUG-GGA--------AGGA----GCCGCgGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 2082 | 0.73 | 0.198259 |
Target: 5'- uGACGCgacgagcgcagccgCCgcaCCUCGGCGCCaUCGGCg -3' miRNA: 3'- gCUGUG--------------GGaa-GGAGCCGCGGcAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 17041 | 0.73 | 0.199818 |
Target: 5'- aCGACGCCC-UCCUUGGCGagGUCuuccacgauGGCa -3' miRNA: 3'- -GCUGUGGGaAGGAGCCGCggCAG---------UCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 5933 | 0.73 | 0.199297 |
Target: 5'- gGACGCgCCgcCUUCGGCGCCGUUcccguccacgccgGGCu -3' miRNA: 3'- gCUGUG-GGaaGGAGCCGCGGCAG-------------UCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 12117 | 0.73 | 0.199818 |
Target: 5'- gGACGCCCccgaggCCuUCGGUGCCGacCGGCu -3' miRNA: 3'- gCUGUGGGaa----GG-AGCCGCGGCa-GUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 35126 | 0.72 | 0.232706 |
Target: 5'- cCGGC-CCCUcgucuucUCCugccuUCGGUGCCGUCuGGCg -3' miRNA: 3'- -GCUGuGGGA-------AGG-----AGCCGCGGCAG-UCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 32456 | 0.72 | 0.238713 |
Target: 5'- -aGCGCCCaUCCgcgcuucUCGuCGCCGUCGGCg -3' miRNA: 3'- gcUGUGGGaAGG-------AGCcGCGGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 23543 | 0.72 | 0.251748 |
Target: 5'- aGAUGCUCcUCCagGGCGCUGcUCGGCg -3' miRNA: 3'- gCUGUGGGaAGGagCCGCGGC-AGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 36747 | 0.72 | 0.233301 |
Target: 5'- gCGcUACCUccCCUCGGCcgccggccucGCCGUCGGCg -3' miRNA: 3'- -GCuGUGGGaaGGAGCCG----------CGGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 33098 | 0.72 | 0.251748 |
Target: 5'- -cGCGCCUggaaugCCUCGGUGCCcuugucGUCGGCc -3' miRNA: 3'- gcUGUGGGaa----GGAGCCGCGG------CAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 22109 | 0.71 | 0.258159 |
Target: 5'- aGGcCGCCCagcagagCC-CGGCGCCG-CAGCa -3' miRNA: 3'- gCU-GUGGGaa-----GGaGCCGCGGCaGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 28858 | 0.71 | 0.285139 |
Target: 5'- gCGcCGCCCgacuUCCgCGGCGCUGccgagCAGCa -3' miRNA: 3'- -GCuGUGGGa---AGGaGCCGCGGCa----GUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 45387 | 0.7 | 0.329702 |
Target: 5'- gGGCGCUCcaCCaggaggCGgaGCGCCGUCAGCg -3' miRNA: 3'- gCUGUGGGaaGGa-----GC--CGCGGCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 26110 | 0.7 | 0.299444 |
Target: 5'- gGGCugCg--CCUCGGCGgCCGgCGGCg -3' miRNA: 3'- gCUGugGgaaGGAGCCGC-GGCaGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 9973 | 0.7 | 0.314298 |
Target: 5'- cCGGCuuCCgagcgCCUCGacGCGCaCGUCGGCa -3' miRNA: 3'- -GCUGugGGaa---GGAGC--CGCG-GCAGUCG- -5' |
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11441 | 5' | -58.6 | NC_003085.1 | + | 43352 | 0.7 | 0.292223 |
Target: 5'- --cCGCCCUUCg-CGGCGUCGUaGGCg -3' miRNA: 3'- gcuGUGGGAAGgaGCCGCGGCAgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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