miRNA display CGI


Results 21 - 40 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11447 5' -55.7 NC_003085.1 + 3314 0.68 0.572554
Target:  5'- aCUCGGGAcGCUgauucaggCGCUggUCGCCGCacagacgacgcuCCCCg -3'
miRNA:   3'- aGAGCUUU-CGA--------GUGA--AGCGGCG------------GGGG- -5'
11447 5' -55.7 NC_003085.1 + 46666 0.68 0.572554
Target:  5'- --cCGAGg---CGCUUCGCCGCCgCCu -3'
miRNA:   3'- agaGCUUucgaGUGAAGCGGCGGgGG- -5'
11447 5' -55.7 NC_003085.1 + 37356 0.68 0.550893
Target:  5'- cCUCGggGGCgUCcgACUUgCGCgCGUCaCCCg -3'
miRNA:   3'- aGAGCuuUCG-AG--UGAA-GCG-GCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 26505 0.68 0.529489
Target:  5'- aCUgGGccGGCUCguccgGCUUCGCCGUCgCCg -3'
miRNA:   3'- aGAgCUu-UCGAG-----UGAAGCGGCGGgGG- -5'
11447 5' -55.7 NC_003085.1 + 11248 0.68 0.529489
Target:  5'- -gUCGAGAGUgCACgagccacCGCCGCCCg- -3'
miRNA:   3'- agAGCUUUCGaGUGaa-----GCGGCGGGgg -5'
11447 5' -55.7 NC_003085.1 + 18355 0.68 0.529489
Target:  5'- gCUCGGgguuGAGC-CGC-UCGCCGCUuauggCCCg -3'
miRNA:   3'- aGAGCU----UUCGaGUGaAGCGGCGG-----GGG- -5'
11447 5' -55.7 NC_003085.1 + 36136 0.68 0.5189
Target:  5'- gCUCGGuacauggcGGGCUCGCUgaugauggUCGCCGaCCgCUCg -3'
miRNA:   3'- aGAGCU--------UUCGAGUGA--------AGCGGC-GG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 26547 0.69 0.508397
Target:  5'- cCUCGGAGG---GCUUCGCCccggcaGCCUCCg -3'
miRNA:   3'- aGAGCUUUCgagUGAAGCGG------CGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 6582 0.69 0.508397
Target:  5'- cCUCGGc--CUCACccUCGacaCGCCCCCg -3'
miRNA:   3'- aGAGCUuucGAGUGa-AGCg--GCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 33095 0.69 0.505264
Target:  5'- --gCGGAGGCUCACUccuggguggcgcugUCGaaCGCUCCCu -3'
miRNA:   3'- agaGCUUUCGAGUGA--------------AGCg-GCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 36361 0.69 0.487669
Target:  5'- aUCUCGGGAGUuggcuugCACUUCGUcaugCGaCCUCCa -3'
miRNA:   3'- -AGAGCUUUCGa------GUGAAGCG----GC-GGGGG- -5'
11447 5' -55.7 NC_003085.1 + 5919 0.7 0.457351
Target:  5'- aUCUCGcgcAAGCUgGacgCGCCGCCUUCg -3'
miRNA:   3'- -AGAGCu--UUCGAgUgaaGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 39702 0.7 0.447471
Target:  5'- gCUUGuGAAGCUCGCUUUccaaGCgCGCCCUg -3'
miRNA:   3'- aGAGC-UUUCGAGUGAAG----CG-GCGGGGg -5'
11447 5' -55.7 NC_003085.1 + 49257 0.7 0.437711
Target:  5'- gUCcCGAcuGAGUUCGCcgCGCCGCgUCCa -3'
miRNA:   3'- -AGaGCU--UUCGAGUGaaGCGGCGgGGG- -5'
11447 5' -55.7 NC_003085.1 + 12260 0.7 0.436741
Target:  5'- -aUUGAAGGC-CGCUggcgccgugaaacUgGCCGUCCCCg -3'
miRNA:   3'- agAGCUUUCGaGUGA-------------AgCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 16251 0.7 0.418563
Target:  5'- cCUCGu--GCUgCGC--CGCCGCCUCCa -3'
miRNA:   3'- aGAGCuuuCGA-GUGaaGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 38629 0.7 0.418563
Target:  5'- -gUCGGGAcGCUCAagccgcuggggUUUGCCGCCUCCa -3'
miRNA:   3'- agAGCUUU-CGAGUg----------AAGCGGCGGGGG- -5'
11447 5' -55.7 NC_003085.1 + 40425 0.72 0.347329
Target:  5'- cUUCGGAGGCgCGCUgccUGCCGCCgUCCa -3'
miRNA:   3'- aGAGCUUUCGaGUGAa--GCGGCGG-GGG- -5'
11447 5' -55.7 NC_003085.1 + 15271 0.72 0.339057
Target:  5'- --gCGGccGAGCUCACc-CGCCGCgCCCg -3'
miRNA:   3'- agaGCU--UUCGAGUGaaGCGGCGgGGG- -5'
11447 5' -55.7 NC_003085.1 + 38117 0.73 0.299862
Target:  5'- gUCUCGGAGGUgccgugagGC-UCGCCGCCCUg -3'
miRNA:   3'- -AGAGCUUUCGag------UGaAGCGGCGGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.