miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11448 5' -55.4 NC_003085.1 + 47377 0.66 0.744837
Target:  5'- aGGUgCGgCg--GCUGCG-CUCGUCGCg -3'
miRNA:   3'- -CCAgGUgGaagCGGUGCaGAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 47244 0.67 0.670507
Target:  5'- cGGuUCCACgagCGCCACuggcuucuguGUCUCGUUGa -3'
miRNA:   3'- -CC-AGGUGgaaGCGGUG----------CAGAGCAGCg -5'
11448 5' -55.4 NC_003085.1 + 46513 0.71 0.420468
Target:  5'- gGGUCCACCUcuuUgGCCuCGUgCUCGaCGUc -3'
miRNA:   3'- -CCAGGUGGA---AgCGGuGCA-GAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 44965 0.66 0.744837
Target:  5'- cGUUgGCCcagUCGCCAgcgcgcuuCGUCaccgugcccucgUCGUCGCg -3'
miRNA:   3'- cCAGgUGGa--AGCGGU--------GCAG------------AGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 44123 0.7 0.509386
Target:  5'- uGGUCCuucuCCgcgGCCACGcgcuUCUCgGUCGCc -3'
miRNA:   3'- -CCAGGu---GGaagCGGUGC----AGAG-CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 43310 0.7 0.475766
Target:  5'- aGGUCCACCaguccCGCCAUGUCgcccuccucUCGuaccuccccgcccuUCGCg -3'
miRNA:   3'- -CCAGGUGGaa---GCGGUGCAG---------AGC--------------AGCG- -5'
11448 5' -55.4 NC_003085.1 + 43183 0.67 0.637905
Target:  5'- -cUCCACCgccgcgcgguacUUCGCgGCGUcCUCGUgcagCGCg -3'
miRNA:   3'- ccAGGUGG------------AAGCGgUGCA-GAGCA----GCG- -5'
11448 5' -55.4 NC_003085.1 + 42348 0.69 0.530241
Target:  5'- uGGaCUuCCUUCGCCGCccgCUCG-CGCa -3'
miRNA:   3'- -CCaGGuGGAAGCGGUGca-GAGCaGCG- -5'
11448 5' -55.4 NC_003085.1 + 41548 0.67 0.648791
Target:  5'- cGUCUGCUgcCGCCGCGgCggcaGUCGCg -3'
miRNA:   3'- cCAGGUGGaaGCGGUGCaGag--CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 41343 0.67 0.653141
Target:  5'- aGGUCCACCacgUcaucagcgcccaacuUCGCgGCGUgaUGUUGCg -3'
miRNA:   3'- -CCAGGUGG---A---------------AGCGgUGCAgaGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 40942 0.7 0.499088
Target:  5'- --aCCGCCUUCGCCuGCGcccgCUgGUgCGCg -3'
miRNA:   3'- ccaGGUGGAAGCGG-UGCa---GAgCA-GCG- -5'
11448 5' -55.4 NC_003085.1 + 40634 0.66 0.71343
Target:  5'- -cUCCugCUcgcgcaGCCAUGUCUCGgcaGCc -3'
miRNA:   3'- ccAGGugGAag----CGGUGCAGAGCag-CG- -5'
11448 5' -55.4 NC_003085.1 + 40129 0.69 0.530241
Target:  5'- uGGUCCugGCCgcCG-CGCGUCUgaGUCGCu -3'
miRNA:   3'- -CCAGG--UGGaaGCgGUGCAGAg-CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 40022 0.68 0.594405
Target:  5'- cGUCCAUgagCGCCggcACGUCcgCGUCGUg -3'
miRNA:   3'- cCAGGUGgaaGCGG---UGCAGa-GCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 38420 0.66 0.71343
Target:  5'- uGGUUCGCguUUUCGgCACca-UCGUCGCg -3'
miRNA:   3'- -CCAGGUG--GAAGCgGUGcagAGCAGCG- -5'
11448 5' -55.4 NC_003085.1 + 37967 0.7 0.509386
Target:  5'- --gCCAUCUggugCGCCAUGUCagCGUCuGCg -3'
miRNA:   3'- ccaGGUGGAa---GCGGUGCAGa-GCAG-CG- -5'
11448 5' -55.4 NC_003085.1 + 36164 0.69 0.551399
Target:  5'- uGGU-CGCCgaccgcUCGCCGCGaUUCGUaCGCa -3'
miRNA:   3'- -CCAgGUGGa-----AGCGGUGCaGAGCA-GCG- -5'
11448 5' -55.4 NC_003085.1 + 35965 0.71 0.429891
Target:  5'- cGUUCGCCgcUGCCACGUCUCcgagguccagGUCGa -3'
miRNA:   3'- cCAGGUGGaaGCGGUGCAGAG----------CAGCg -5'
11448 5' -55.4 NC_003085.1 + 35821 0.68 0.605255
Target:  5'- -uUCCACCUgcUCGCCgagcgccuGCGaCUCaGUCGUg -3'
miRNA:   3'- ccAGGUGGA--AGCGG--------UGCaGAG-CAGCG- -5'
11448 5' -55.4 NC_003085.1 + 35240 0.66 0.70279
Target:  5'- cGGgccCCugCUUCcgcuuGCgCGCGggCUUGUCGCa -3'
miRNA:   3'- -CCa--GGugGAAG-----CG-GUGCa-GAGCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.