Results 1 - 20 of 72 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11449 | 3' | -61.6 | NC_003085.1 | + | 45608 | 0.66 | 0.381387 |
Target: 5'- gCCGUCGaCGCGCCGUGG----UCCu- -3' miRNA: 3'- aGGCGGC-GCGCGGCGCCuuagAGGug -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 1977 | 0.66 | 0.364475 |
Target: 5'- uUCCGCCGCGUGCaugaGCacccg-UCCACu -3' miRNA: 3'- -AGGCGGCGCGCGg---CGccuuagAGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 14060 | 0.66 | 0.369493 |
Target: 5'- gUCCGUCGaggccaucugcgaGCGCCuCGGA--CUCCGCc -3' miRNA: 3'- -AGGCGGCg------------CGCGGcGCCUuaGAGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 48695 | 0.66 | 0.372865 |
Target: 5'- aCCGuuGCGCGgCgugGCGGAcUCgcCCACc -3' miRNA: 3'- aGGCggCGCGCgG---CGCCUuAGa-GGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 49187 | 0.66 | 0.359503 |
Target: 5'- cCUGCCGC-CGCUGCuccucagugagagggGGAGgguucCUCCACu -3' miRNA: 3'- aGGCGGCGcGCGGCG---------------CCUUa----GAGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 28053 | 0.66 | 0.378817 |
Target: 5'- --aGCCGaGCGCCuucacgccagugcaGUGGAGUCUCCu- -3' miRNA: 3'- aggCGGCgCGCGG--------------CGCCUUAGAGGug -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 27396 | 0.66 | 0.381387 |
Target: 5'- aCCGCgCGCGCGugguaccugcCCGCGGGcgcaAUCgCCGg -3' miRNA: 3'- aGGCG-GCGCGC----------GGCGCCU----UAGaGGUg -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 32242 | 0.66 | 0.390037 |
Target: 5'- -gCGCCGCGUGCUcaccaGCGGcGcugaccaacUCUCCAa -3' miRNA: 3'- agGCGGCGCGCGG-----CGCCuU---------AGAGGUg -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 38059 | 0.66 | 0.364475 |
Target: 5'- aCCGCgGCGgugcgucaGCCgGCGGuagcgCUCCACc -3' miRNA: 3'- aGGCGgCGCg-------CGG-CGCCuua--GAGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 10142 | 0.66 | 0.356215 |
Target: 5'- aCCGCgaacUGCGCGgCGgGGAGUa-CCGCg -3' miRNA: 3'- aGGCG----GCGCGCgGCgCCUUAgaGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 6760 | 0.66 | 0.356215 |
Target: 5'- cCUGCCGCGcCGUgGCGGAcggCgagagcccuUCCGCu -3' miRNA: 3'- aGGCGGCGC-GCGgCGCCUua-G---------AGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 46693 | 0.66 | 0.355397 |
Target: 5'- gCCGCCGCuGCcugcuuccgGCCaGCGGAGUCcuugggcagcgccUUCGCg -3' miRNA: 3'- aGGCGGCG-CG---------CGG-CGCCUUAG-------------AGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 6851 | 0.66 | 0.364475 |
Target: 5'- -aCGCCGCGaaugucucCGCCGaGGGAUaccacUUCCACg -3' miRNA: 3'- agGCGGCGC--------GCGGCgCCUUA-----GAGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 7915 | 0.66 | 0.367815 |
Target: 5'- aCUGCCGC-CGCgGCGGcagcagacgucaCUCCACc -3' miRNA: 3'- aGGCGGCGcGCGgCGCCuua---------GAGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 46458 | 0.66 | 0.348089 |
Target: 5'- gUCGuCCGUGCGCCcaGCGGGGagcgguUC-CCACu -3' miRNA: 3'- aGGC-GGCGCGCGG--CGCCUU------AGaGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 24835 | 0.66 | 0.352949 |
Target: 5'- cUCCGCCGaggugaaGCGCUGCagcaccuGGAgcgaguuggaguacGUCgUCCACg -3' miRNA: 3'- -AGGCGGCg------CGCGGCG-------CCU--------------UAG-AGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 26534 | 0.66 | 0.381387 |
Target: 5'- gCCGUCGaCGCgGCCuCGGAGggCUUCGCc -3' miRNA: 3'- aGGCGGC-GCG-CGGcGCCUUa-GAGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 32476 | 0.66 | 0.348089 |
Target: 5'- gUCGCCGUcgGCGUCGCGGGcccggagcgucAUCUCg-- -3' miRNA: 3'- aGGCGGCG--CGCGGCGCCU-----------UAGAGgug -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 14536 | 0.66 | 0.356215 |
Target: 5'- cUCCGCCGCGUGC-GCcugca-UCCACu -3' miRNA: 3'- -AGGCGGCGCGCGgCGccuuagAGGUG- -5' |
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11449 | 3' | -61.6 | NC_003085.1 | + | 25640 | 0.67 | 0.322218 |
Target: 5'- --gGCCGgGCGCCccgucuucaaggacGUGGAGUacaUCCGCa -3' miRNA: 3'- aggCGGCgCGCGG--------------CGCCUUAg--AGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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