miRNA display CGI


Results 1 - 20 of 72 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 3' -61.6 NC_003085.1 + 1977 0.66 0.364475
Target:  5'- uUCCGCCGCGUGCaugaGCacccg-UCCACu -3'
miRNA:   3'- -AGGCGGCGCGCGg---CGccuuagAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 2607 0.67 0.340095
Target:  5'- -aCGCUGCGCGCgaagaaGCGGAGcgcuggCUCC-Ca -3'
miRNA:   3'- agGCGGCGCGCGg-----CGCCUUa-----GAGGuG- -5'
11449 3' -61.6 NC_003085.1 + 4103 0.69 0.224556
Target:  5'- cUCGCCGCuggaguuggGCGCCGCgcuGGGA-CUCCAg -3'
miRNA:   3'- aGGCGGCG---------CGCGGCG---CCUUaGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 4209 0.68 0.280978
Target:  5'- gCCGCUGaCGCGCgGCGGGuuacgcugagcGUCagccgggCCGCa -3'
miRNA:   3'- aGGCGGC-GCGCGgCGCCU-----------UAGa------GGUG- -5'
11449 3' -61.6 NC_003085.1 + 5885 0.7 0.213401
Target:  5'- cUCUGCCGUgGCGCCgggucggugacGCGGGccuAUCUCgCGCa -3'
miRNA:   3'- -AGGCGGCG-CGCGG-----------CGCCU---UAGAG-GUG- -5'
11449 3' -61.6 NC_003085.1 + 6760 0.66 0.356215
Target:  5'- cCUGCCGCGcCGUgGCGGAcggCgagagcccuUCCGCu -3'
miRNA:   3'- aGGCGGCGC-GCGgCGCCUua-G---------AGGUG- -5'
11449 3' -61.6 NC_003085.1 + 6851 0.66 0.364475
Target:  5'- -aCGCCGCGaaugucucCGCCGaGGGAUaccacUUCCACg -3'
miRNA:   3'- agGCGGCGC--------GCGGCgCCUUA-----GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 6916 0.69 0.242212
Target:  5'- cUCGcCCGCGCGCUggccgaggcgaaGCGGGAgg-CCACg -3'
miRNA:   3'- aGGC-GGCGCGCGG------------CGCCUUagaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 7290 0.68 0.280978
Target:  5'- aCCGCCGCcaaGCuCGaCGGGaaGUCUCCGa -3'
miRNA:   3'- aGGCGGCGcg-CG-GC-GCCU--UAGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 7915 0.66 0.367815
Target:  5'- aCUGCCGC-CGCgGCGGcagcagacgucaCUCCACc -3'
miRNA:   3'- aGGCGGCGcGCGgCGCCuua---------GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 8218 0.69 0.236201
Target:  5'- cCUGCCGCGCGUgGCGuuGUagaggCCGCa -3'
miRNA:   3'- aGGCGGCGCGCGgCGCcuUAga---GGUG- -5'
11449 3' -61.6 NC_003085.1 + 9217 0.67 0.309462
Target:  5'- gUUCGCCGCGggaaGCCGCGGugugGAUUUgCAa -3'
miRNA:   3'- -AGGCGGCGCg---CGGCGCC----UUAGAgGUg -5'
11449 3' -61.6 NC_003085.1 + 9577 0.67 0.309462
Target:  5'- cCUGCCGC-CGCCGagcacCGGcgucUCUCCGCc -3'
miRNA:   3'- aGGCGGCGcGCGGC-----GCCuu--AGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 10142 0.66 0.356215
Target:  5'- aCCGCgaacUGCGCGgCGgGGAGUa-CCGCg -3'
miRNA:   3'- aGGCG----GCGCGCgGCgCCUUAgaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 10490 0.71 0.182762
Target:  5'- cCUGCUGCGCGgCGCacuGGAGaaUCCGCg -3'
miRNA:   3'- aGGCGGCGCGCgGCG---CCUUagAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 10611 0.68 0.261009
Target:  5'- gUCGCCGCGCGCCGUcgcaguGGGAcga-CGCg -3'
miRNA:   3'- aGGCGGCGCGCGGCG------CCUUagagGUG- -5'
11449 3' -61.6 NC_003085.1 + 11882 0.67 0.307987
Target:  5'- aUCGCCugaGCGCGCCGaguucauggccaGGcg-CUCCACg -3'
miRNA:   3'- aGGCGG---CGCGCGGCg-----------CCuuaGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 12164 0.69 0.224556
Target:  5'- cCCGCUGCGCaCCGCaGGugcGUCgcugUCCGCg -3'
miRNA:   3'- aGGCGGCGCGcGGCG-CCu--UAG----AGGUG- -5'
11449 3' -61.6 NC_003085.1 + 12786 0.67 0.340095
Target:  5'- cCUGCCGC-CGuuGuCGGGcaggugCUCCACg -3'
miRNA:   3'- aGGCGGCGcGCggC-GCCUua----GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 13460 0.69 0.218918
Target:  5'- aUCCGCCaaGCuGUCGCGGAgcGUUUCCu- -3'
miRNA:   3'- -AGGCGGcgCG-CGGCGCCU--UAGAGGug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.