miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 3' -61.6 NC_003085.1 + 30411 1.09 0.000202
Target:  5'- cUCCGCCGCGCGCCGCGGAAUCUCCACg -3'
miRNA:   3'- -AGGCGGCGCGCGGCGCCUUAGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 39960 0.79 0.047798
Target:  5'- cCCGCCGCGCGCCGCcaucGUCaCCGCg -3'
miRNA:   3'- aGGCGGCGCGCGGCGccu-UAGaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 32851 0.78 0.05502
Target:  5'- --gGCCGCGCGCCGCGGGA---CCGCc -3'
miRNA:   3'- aggCGGCGCGCGGCGCCUUagaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 45259 0.78 0.056587
Target:  5'- cCCGCCGCGCGUCaGCGGcGUCcugcgucugcUCCACc -3'
miRNA:   3'- aGGCGGCGCGCGG-CGCCuUAG----------AGGUG- -5'
11449 3' -61.6 NC_003085.1 + 25125 0.75 0.081316
Target:  5'- gUCGCCGUagaGCGCCGCGGAgauGUCguuggCCAUg -3'
miRNA:   3'- aGGCGGCG---CGCGGCGCCU---UAGa----GGUG- -5'
11449 3' -61.6 NC_003085.1 + 39012 0.75 0.08594
Target:  5'- -gCGCCaaaGCGCCGCGGAGccgaCUCCGCa -3'
miRNA:   3'- agGCGGcg-CGCGGCGCCUUa---GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 40928 0.75 0.08594
Target:  5'- cUCGCCGCGCGCCGagaGGugccUCUCC-Ca -3'
miRNA:   3'- aGGCGGCGCGCGGCg--CCuu--AGAGGuG- -5'
11449 3' -61.6 NC_003085.1 + 48915 0.75 0.090814
Target:  5'- gCCGCCuCGCGCCGUucgccAAUCUCCGCg -3'
miRNA:   3'- aGGCGGcGCGCGGCGcc---UUAGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 29017 0.74 0.09862
Target:  5'- gCgGCuCGCGCGCgGCGGAcAUCUCCu- -3'
miRNA:   3'- aGgCG-GCGCGCGgCGCCU-UAGAGGug -5'
11449 3' -61.6 NC_003085.1 + 19056 0.73 0.125995
Target:  5'- uUCCGCgGCGCGCgGCGGAGcaggCgCCGg -3'
miRNA:   3'- -AGGCGgCGCGCGgCGCCUUa---GaGGUg -5'
11449 3' -61.6 NC_003085.1 + 20047 0.73 0.125995
Target:  5'- gCCGCCGCccGCGCCcuccuggaGCGGGAcaUCCGCu -3'
miRNA:   3'- aGGCGGCG--CGCGG--------CGCCUUagAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 44208 0.72 0.1403
Target:  5'- aCUGCCGCGCGcCCGCaGcGUCgaaCCACc -3'
miRNA:   3'- aGGCGGCGCGC-GGCGcCuUAGa--GGUG- -5'
11449 3' -61.6 NC_003085.1 + 47095 0.71 0.164557
Target:  5'- --aGCuCGCGCGCCGCGGc--CUCgCACu -3'
miRNA:   3'- aggCG-GCGCGCGGCGCCuuaGAG-GUG- -5'
11449 3' -61.6 NC_003085.1 + 39325 0.71 0.16895
Target:  5'- cCCGCCGCGCaGuUCGCGGuAGUCcgCUGCg -3'
miRNA:   3'- aGGCGGCGCG-C-GGCGCC-UUAGa-GGUG- -5'
11449 3' -61.6 NC_003085.1 + 44095 0.71 0.16895
Target:  5'- aUCGCCGCGgccaGCCGaCGGAAUgccucUUCCGCc -3'
miRNA:   3'- aGGCGGCGCg---CGGC-GCCUUA-----GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 38951 0.71 0.173447
Target:  5'- uUCgGgCGUGCGCuucCGCGGAuUCUCCAg -3'
miRNA:   3'- -AGgCgGCGCGCG---GCGCCUuAGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 10490 0.71 0.182762
Target:  5'- cCUGCUGCGCGgCGCacuGGAGaaUCCGCg -3'
miRNA:   3'- aGGCGGCGCGCgGCG---CCUUagAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 13547 0.7 0.192517
Target:  5'- uUCCGCCuGCGCggcugGCCGUGGcAUggcccugggaCUCCGCg -3'
miRNA:   3'- -AGGCGG-CGCG-----CGGCGCCuUA----------GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 20450 0.7 0.202726
Target:  5'- gUCCGCCGCGCgcgaGCCGCuGGAGaagUggCACa -3'
miRNA:   3'- -AGGCGGCGCG----CGGCG-CCUUa--GagGUG- -5'
11449 3' -61.6 NC_003085.1 + 41556 0.7 0.213401
Target:  5'- gCCGCCGCGgcggcaGUCGCGGGAg--CCAg -3'
miRNA:   3'- aGGCGGCGCg-----CGGCGCCUUagaGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.