miRNA display CGI


Results 1 - 20 of 72 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11449 3' -61.6 NC_003085.1 + 19691 0.67 0.309462
Target:  5'- gCgGCCcuggagGCGCGCgGCGGcAUCUgCACc -3'
miRNA:   3'- aGgCGG------CGCGCGgCGCCuUAGAgGUG- -5'
11449 3' -61.6 NC_003085.1 + 4103 0.69 0.224556
Target:  5'- cUCGCCGCuggaguuggGCGCCGCgcuGGGA-CUCCAg -3'
miRNA:   3'- aGGCGGCG---------CGCGGCG---CCUUaGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 48962 0.69 0.236201
Target:  5'- gUCCGgcCCGCGCGCCuuc--AUCUCCGCg -3'
miRNA:   3'- -AGGC--GGCGCGCGGcgccuUAGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 44152 0.69 0.240396
Target:  5'- gUgGCCaCGCGCuCGCGGAgggaggcgacuucgGUCUCCAg -3'
miRNA:   3'- aGgCGGcGCGCG-GCGCCU--------------UAGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 43187 0.69 0.248349
Target:  5'- aCCGCCGCGCGguacuUCGCGGcGUcCUCgUGCa -3'
miRNA:   3'- aGGCGGCGCGC-----GGCGCCuUA-GAG-GUG- -5'
11449 3' -61.6 NC_003085.1 + 4209 0.68 0.280978
Target:  5'- gCCGCUGaCGCGCgGCGGGuuacgcugagcGUCagccgggCCGCa -3'
miRNA:   3'- aGGCGGC-GCGCGgCGCCU-----------UAGa------GGUG- -5'
11449 3' -61.6 NC_003085.1 + 14614 0.68 0.280978
Target:  5'- gUCCGCCGCGUcgaagcucauggGCUGUGuGAcgC-CCACc -3'
miRNA:   3'- -AGGCGGCGCG------------CGGCGC-CUuaGaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 7290 0.68 0.280978
Target:  5'- aCCGCCGCcaaGCuCGaCGGGaaGUCUCCGa -3'
miRNA:   3'- aGGCGGCGcg-CG-GC-GCCU--UAGAGGUg -5'
11449 3' -61.6 NC_003085.1 + 11882 0.67 0.307987
Target:  5'- aUCGCCugaGCGCGCCGaguucauggccaGGcg-CUCCACg -3'
miRNA:   3'- aGGCGG---CGCGCGGCg-----------CCuuaGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 41556 0.7 0.213401
Target:  5'- gCCGCCGCGgcggcaGUCGCGGGAg--CCAg -3'
miRNA:   3'- aGGCGGCGCg-----CGGCGCCUUagaGGUg -5'
11449 3' -61.6 NC_003085.1 + 14924 0.7 0.213401
Target:  5'- gCCGCCaGCGCGUggcgcuccaacuCGCGGAA-CUgCGCg -3'
miRNA:   3'- aGGCGG-CGCGCG------------GCGCCUUaGAgGUG- -5'
11449 3' -61.6 NC_003085.1 + 30800 0.7 0.213401
Target:  5'- gCCGUgaGCGCGCCGCaGcAAUCaCCGCg -3'
miRNA:   3'- aGGCGg-CGCGCGGCGcC-UUAGaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 32851 0.78 0.05502
Target:  5'- --gGCCGCGCGCCGCGGGA---CCGCc -3'
miRNA:   3'- aggCGGCGCGCGGCGCCUUagaGGUG- -5'
11449 3' -61.6 NC_003085.1 + 40928 0.75 0.08594
Target:  5'- cUCGCCGCGCGCCGagaGGugccUCUCC-Ca -3'
miRNA:   3'- aGGCGGCGCGCGGCg--CCuu--AGAGGuG- -5'
11449 3' -61.6 NC_003085.1 + 48915 0.75 0.090814
Target:  5'- gCCGCCuCGCGCCGUucgccAAUCUCCGCg -3'
miRNA:   3'- aGGCGGcGCGCGGCGcc---UUAGAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 19056 0.73 0.125995
Target:  5'- uUCCGCgGCGCGCgGCGGAGcaggCgCCGg -3'
miRNA:   3'- -AGGCGgCGCGCGgCGCCUUa---GaGGUg -5'
11449 3' -61.6 NC_003085.1 + 20047 0.73 0.125995
Target:  5'- gCCGCCGCccGCGCCcuccuggaGCGGGAcaUCCGCu -3'
miRNA:   3'- aGGCGGCG--CGCGG--------CGCCUUagAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 44095 0.71 0.16895
Target:  5'- aUCGCCGCGgccaGCCGaCGGAAUgccucUUCCGCc -3'
miRNA:   3'- aGGCGGCGCg---CGGC-GCCUUA-----GAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 10490 0.71 0.182762
Target:  5'- cCUGCUGCGCGgCGCacuGGAGaaUCCGCg -3'
miRNA:   3'- aGGCGGCGCGCgGCG---CCUUagAGGUG- -5'
11449 3' -61.6 NC_003085.1 + 20450 0.7 0.202726
Target:  5'- gUCCGCCGCGCgcgaGCCGCuGGAGaagUggCACa -3'
miRNA:   3'- -AGGCGGCGCG----CGGCG-CCUUa--GagGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.