miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 5' -58.8 NC_003085.1 + 22207 0.66 0.485989
Target:  5'- gUGCagG-GCgACCUGCUgcgcauccagGCUGAGaCGCa -3'
miRNA:   3'- -ACGagCaCGgUGGACGG----------UGACUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 47884 0.66 0.475864
Target:  5'- aGCgCGUGCgGCCUGCUcuCUGccAGUGUc -3'
miRNA:   3'- aCGaGCACGgUGGACGGu-GAC--UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 2241 0.66 0.475864
Target:  5'- cGCUgGUGCgCaauGCCUGCCcACcgGGGgGCc -3'
miRNA:   3'- aCGAgCACG-G---UGGACGG-UGa-CUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 9860 0.66 0.459885
Target:  5'- cUGCUCGgugcGCUccgcgacgcgcuccaGCUUGCCAgUG-GCGCc -3'
miRNA:   3'- -ACGAGCa---CGG---------------UGGACGGUgACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 1515 0.66 0.456921
Target:  5'- cGCUCGggcaagagGCaGCCgaguaccagcgacucGUCACUGAGUGCg -3'
miRNA:   3'- aCGAGCa-------CGgUGGa--------------CGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 46672 0.66 0.455935
Target:  5'- cGCUUc-GCCGCC-GCCug-GAGCGCc -3'
miRNA:   3'- aCGAGcaCGGUGGaCGGugaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 23412 0.66 0.455935
Target:  5'- cUGCUCGaUGCgCucgcCCUGCUccuucaacuGCUG-GCGCa -3'
miRNA:   3'- -ACGAGC-ACG-Gu---GGACGG---------UGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 45903 0.66 0.44614
Target:  5'- cGCUUGcGCCcgGCC-GCC-UUGAGCGUg -3'
miRNA:   3'- aCGAGCaCGG--UGGaCGGuGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 6103 0.66 0.44614
Target:  5'- cUGCU--UGCCGCCUacgacGCCGCgaaGGGCGg -3'
miRNA:   3'- -ACGAgcACGGUGGA-----CGGUGa--CUCGCg -5'
11450 5' -58.8 NC_003085.1 + 14264 0.67 0.436464
Target:  5'- aGCgagaCGUGCgGCCagGCUGCUGccgucaAGCGCc -3'
miRNA:   3'- aCGa---GCACGgUGGa-CGGUGAC------UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 40125 0.67 0.436464
Target:  5'- cUGCUgGUccugGCCGCCgcGCguCUGAGuCGCu -3'
miRNA:   3'- -ACGAgCA----CGGUGGa-CGguGACUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 7091 0.67 0.436464
Target:  5'- cGCUCaUGCCGCCgagGgCAUgcgcGAGCGg -3'
miRNA:   3'- aCGAGcACGGUGGa--CgGUGa---CUCGCg -5'
11450 5' -58.8 NC_003085.1 + 41928 0.67 0.424068
Target:  5'- aGCcCGUGCCcacggcauggccccACUUGCCGCcaccGAGaCGCa -3'
miRNA:   3'- aCGaGCACGG--------------UGGACGGUGa---CUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 8435 0.67 0.417481
Target:  5'- gUGCUCG-GCCAgcagcagccgucCCUGUCGCucuacaUGAcGCGCc -3'
miRNA:   3'- -ACGAGCaCGGU------------GGACGGUG------ACU-CGCG- -5'
11450 5' -58.8 NC_003085.1 + 30175 0.67 0.40818
Target:  5'- aGCUucuugaCGUGCU-CCgGCCugUcGAGCGCu -3'
miRNA:   3'- aCGA------GCACGGuGGaCGGugA-CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 40706 0.67 0.39901
Target:  5'- cGcCUCGUuagugacgaGCCGCUUgGCCACgaaGGCGCg -3'
miRNA:   3'- aC-GAGCA---------CGGUGGA-CGGUGac-UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 20413 0.67 0.39901
Target:  5'- gGCUgGUgGCCAaCUGCUGCUGgacGGCGUu -3'
miRNA:   3'- aCGAgCA-CGGUgGACGGUGAC---UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 36630 0.67 0.39901
Target:  5'- aGUUCGcGUCugUcauUGCCugUGAGgGCg -3'
miRNA:   3'- aCGAGCaCGGugG---ACGGugACUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 7763 0.67 0.389973
Target:  5'- gGC-CGUGUCAUCaGCCAUcgucgcggcGAGCGCa -3'
miRNA:   3'- aCGaGCACGGUGGaCGGUGa--------CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 678 0.68 0.381071
Target:  5'- cGC-CG-GCCACCUGucCCGCguccggccucGGGCGCg -3'
miRNA:   3'- aCGaGCaCGGUGGAC--GGUGa---------CUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.