miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 5' -58.8 NC_003085.1 + 30276 1.11 0.000251
Target:  5'- cUGCUCGUGCCACCUGCCACUGAGCGCu -3'
miRNA:   3'- -ACGAGCACGGUGGACGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 27400 0.74 0.151592
Target:  5'- cGCgcgCGUGgUACCUGcCCGC-GGGCGCa -3'
miRNA:   3'- aCGa--GCACgGUGGAC-GGUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 8477 0.72 0.188255
Target:  5'- cGCUgG-GCCAgccCUUGCCGCUugcGAGCGCu -3'
miRNA:   3'- aCGAgCaCGGU---GGACGGUGA---CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 12208 0.71 0.232499
Target:  5'- gGUaCGUGUggucugcgaCGCCUGCC-UUGAGCGCg -3'
miRNA:   3'- aCGaGCACG---------GUGGACGGuGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 45813 0.71 0.238607
Target:  5'- --gUCGUGCCACuccguCUGCCACcGAGCa- -3'
miRNA:   3'- acgAGCACGGUG-----GACGGUGaCUCGcg -5'
11450 5' -58.8 NC_003085.1 + 44810 0.71 0.244849
Target:  5'- gGCUC--GCC-UCUGCCACcggGGGCGCg -3'
miRNA:   3'- aCGAGcaCGGuGGACGGUGa--CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 36287 0.7 0.251226
Target:  5'- cUGCUgugGUGCCGCUcugagaacuUGCaACUGGGCGCu -3'
miRNA:   3'- -ACGAg--CACGGUGG---------ACGgUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 12245 0.7 0.251226
Target:  5'- gGCUgG-GCCGCCagaauugaagGCCGCUG-GCGCc -3'
miRNA:   3'- aCGAgCaCGGUGGa---------CGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 35130 0.7 0.251226
Target:  5'- gGC-CGUGCCAUugugggccggCUGCCGCaacaUGAGCGg -3'
miRNA:   3'- aCGaGCACGGUG----------GACGGUG----ACUCGCg -5'
11450 5' -58.8 NC_003085.1 + 26370 0.7 0.25774
Target:  5'- cGCagCGgaUGCCguuGCUcggGCCGCUGAGCGCc -3'
miRNA:   3'- aCGa-GC--ACGG---UGGa--CGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 816 0.7 0.264391
Target:  5'- cGUccgCGUGCCGCCgcagGUCGucGAGCGCg -3'
miRNA:   3'- aCGa--GCACGGUGGa---CGGUgaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 16255 0.7 0.27118
Target:  5'- gUGCUgCGccGCCGCCUccaggacgcccGCUACUG-GCGCg -3'
miRNA:   3'- -ACGA-GCa-CGGUGGA-----------CGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 2988 0.69 0.292389
Target:  5'- aGCgcgCGUGggaaCCGCUccCCGCUGGGCGCa -3'
miRNA:   3'- aCGa--GCAC----GGUGGacGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 35805 0.69 0.299741
Target:  5'- gGCacCGUGaacaccguuCCACCUGCuCGCcGAGCGCc -3'
miRNA:   3'- aCGa-GCAC---------GGUGGACG-GUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 10257 0.69 0.302721
Target:  5'- cGC-CGUGCCACCuggaaaguacggacgUGUCucaaaGCUGAGCGa -3'
miRNA:   3'- aCGaGCACGGUGG---------------ACGG-----UGACUCGCg -5'
11450 5' -58.8 NC_003085.1 + 26974 0.69 0.307235
Target:  5'- aGCUCG-GCCugCgcaGCCGgCUGGGCu- -3'
miRNA:   3'- aCGAGCaCGGugGa--CGGU-GACUCGcg -5'
11450 5' -58.8 NC_003085.1 + 5988 0.69 0.314871
Target:  5'- gUGCUUGccaguugGCuCGCCUaCgGCUGGGCGCg -3'
miRNA:   3'- -ACGAGCa------CG-GUGGAcGgUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 3905 0.69 0.314871
Target:  5'- cUGCUCGUGCUGCgacGCCucgaacuggaaGCcGAGCGCc -3'
miRNA:   3'- -ACGAGCACGGUGga-CGG-----------UGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 42366 0.69 0.322651
Target:  5'- cGCUCGcgcaUGCCcUCgGCgGCaUGAGCGCg -3'
miRNA:   3'- aCGAGC----ACGGuGGaCGgUG-ACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 10476 0.68 0.338636
Target:  5'- -cCUCGgcugGCCgACCUGCUGCgcGGCGCa -3'
miRNA:   3'- acGAGCa---CGG-UGGACGGUGacUCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.