miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 5' -58.8 NC_003085.1 + 678 0.68 0.381071
Target:  5'- cGC-CG-GCCACCUGucCCGCguccggccucGGGCGCg -3'
miRNA:   3'- aCGaGCaCGGUGGAC--GGUGa---------CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 816 0.7 0.264391
Target:  5'- cGUccgCGUGCCGCCgcagGUCGucGAGCGCg -3'
miRNA:   3'- aCGa--GCACGGUGGa---CGGUgaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 1515 0.66 0.456921
Target:  5'- cGCUCGggcaagagGCaGCCgaguaccagcgacucGUCACUGAGUGCg -3'
miRNA:   3'- aCGAGCa-------CGgUGGa--------------CGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 2241 0.66 0.475864
Target:  5'- cGCUgGUGCgCaauGCCUGCCcACcgGGGgGCc -3'
miRNA:   3'- aCGAgCACG-G---UGGACGG-UGa-CUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 2541 0.68 0.363678
Target:  5'- cGCgccgaaccUGUGCCGCCUGCCGC--GGUGa -3'
miRNA:   3'- aCGa-------GCACGGUGGACGGUGacUCGCg -5'
11450 5' -58.8 NC_003085.1 + 2988 0.69 0.292389
Target:  5'- aGCgcgCGUGggaaCCGCUccCCGCUGGGCGCa -3'
miRNA:   3'- aCGa--GCAC----GGUGGacGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 3905 0.69 0.314871
Target:  5'- cUGCUCGUGCUGCgacGCCucgaacuggaaGCcGAGCGCc -3'
miRNA:   3'- -ACGAGCACGGUGga-CGG-----------UGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 5988 0.69 0.314871
Target:  5'- gUGCUUGccaguugGCuCGCCUaCgGCUGGGCGCg -3'
miRNA:   3'- -ACGAGCa------CG-GUGGAcGgUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 6103 0.66 0.44614
Target:  5'- cUGCU--UGCCGCCUacgacGCCGCgaaGGGCGg -3'
miRNA:   3'- -ACGAgcACGGUGGA-----CGGUGa--CUCGCg -5'
11450 5' -58.8 NC_003085.1 + 7091 0.67 0.436464
Target:  5'- cGCUCaUGCCGCCgagGgCAUgcgcGAGCGg -3'
miRNA:   3'- aCGAGcACGGUGGa--CgGUGa---CUCGCg -5'
11450 5' -58.8 NC_003085.1 + 7763 0.67 0.389973
Target:  5'- gGC-CGUGUCAUCaGCCAUcgucgcggcGAGCGCa -3'
miRNA:   3'- aCGaGCACGGUGGaCGGUGa--------CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 8435 0.67 0.417481
Target:  5'- gUGCUCG-GCCAgcagcagccgucCCUGUCGCucuacaUGAcGCGCc -3'
miRNA:   3'- -ACGAGCaCGGU------------GGACGGUG------ACU-CGCG- -5'
11450 5' -58.8 NC_003085.1 + 8477 0.72 0.188255
Target:  5'- cGCUgG-GCCAgccCUUGCCGCUugcGAGCGCu -3'
miRNA:   3'- aCGAgCaCGGU---GGACGGUGA---CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 9860 0.66 0.459885
Target:  5'- cUGCUCGgugcGCUccgcgacgcgcuccaGCUUGCCAgUG-GCGCc -3'
miRNA:   3'- -ACGAGCa---CGG---------------UGGACGGUgACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 10257 0.69 0.302721
Target:  5'- cGC-CGUGCCACCuggaaaguacggacgUGUCucaaaGCUGAGCGa -3'
miRNA:   3'- aCGaGCACGGUGG---------------ACGG-----UGACUCGCg -5'
11450 5' -58.8 NC_003085.1 + 10476 0.68 0.338636
Target:  5'- -cCUCGgcugGCCgACCUGCUGCgcGGCGCa -3'
miRNA:   3'- acGAGCa---CGG-UGGACGGUGacUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 12020 0.68 0.372305
Target:  5'- cGCUg--GCgCACCUGCCGgUGcuGCGCg -3'
miRNA:   3'- aCGAgcaCG-GUGGACGGUgACu-CGCG- -5'
11450 5' -58.8 NC_003085.1 + 12208 0.71 0.232499
Target:  5'- gGUaCGUGUggucugcgaCGCCUGCC-UUGAGCGCg -3'
miRNA:   3'- aCGaGCACG---------GUGGACGGuGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 12245 0.7 0.251226
Target:  5'- gGCUgG-GCCGCCagaauugaagGCCGCUG-GCGCc -3'
miRNA:   3'- aCGAgCaCGGUGGa---------CGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 14264 0.67 0.436464
Target:  5'- aGCgagaCGUGCgGCCagGCUGCUGccgucaAGCGCc -3'
miRNA:   3'- aCGa---GCACGgUGGa-CGGUGAC------UCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.