miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 5' -58.8 NC_003085.1 + 41928 0.67 0.424068
Target:  5'- aGCcCGUGCCcacggcauggccccACUUGCCGCcaccGAGaCGCa -3'
miRNA:   3'- aCGaGCACGG--------------UGGACGGUGa---CUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 10476 0.68 0.338636
Target:  5'- -cCUCGgcugGCCgACCUGCUGCgcGGCGCa -3'
miRNA:   3'- acGAGCa---CGG-UGGACGGUGacUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 42249 0.68 0.346843
Target:  5'- gGCUCGcGCUACUccaGCgGCaGGGCGCg -3'
miRNA:   3'- aCGAGCaCGGUGGa--CGgUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 23334 0.68 0.346843
Target:  5'- cGCUCuggccggccaaGcGCCGCCgGCCGCcGAGgCGCa -3'
miRNA:   3'- aCGAG-----------CaCGGUGGaCGGUGaCUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 12020 0.68 0.372305
Target:  5'- cGCUg--GCgCACCUGCCGgUGcuGCGCg -3'
miRNA:   3'- aCGAgcaCG-GUGGACGGUgACu-CGCG- -5'
11450 5' -58.8 NC_003085.1 + 678 0.68 0.381071
Target:  5'- cGC-CG-GCCACCUGucCCGCguccggccucGGGCGCg -3'
miRNA:   3'- aCGaGCaCGGUGGAC--GGUGa---------CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 7763 0.67 0.389973
Target:  5'- gGC-CGUGUCAUCaGCCAUcgucgcggcGAGCGCa -3'
miRNA:   3'- aCGaGCACGGUGGaCGGUGa--------CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 36630 0.67 0.39901
Target:  5'- aGUUCGcGUCugUcauUGCCugUGAGgGCg -3'
miRNA:   3'- aCGAGCaCGGugG---ACGGugACUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 8435 0.67 0.417481
Target:  5'- gUGCUCG-GCCAgcagcagccgucCCUGUCGCucuacaUGAcGCGCc -3'
miRNA:   3'- -ACGAGCaCGGU------------GGACGGUG------ACU-CGCG- -5'
11450 5' -58.8 NC_003085.1 + 42366 0.69 0.322651
Target:  5'- cGCUCGcgcaUGCCcUCgGCgGCaUGAGCGCg -3'
miRNA:   3'- aCGAGC----ACGGuGGaCGgUG-ACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 3905 0.69 0.314871
Target:  5'- cUGCUCGUGCUGCgacGCCucgaacuggaaGCcGAGCGCc -3'
miRNA:   3'- -ACGAGCACGGUGga-CGG-----------UGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 5988 0.69 0.314871
Target:  5'- gUGCUUGccaguugGCuCGCCUaCgGCUGGGCGCg -3'
miRNA:   3'- -ACGAGCa------CG-GUGGAcGgUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 44810 0.71 0.244849
Target:  5'- gGCUC--GCC-UCUGCCACcggGGGCGCg -3'
miRNA:   3'- aCGAGcaCGGuGGACGGUGa--CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 35130 0.7 0.251226
Target:  5'- gGC-CGUGCCAUugugggccggCUGCCGCaacaUGAGCGg -3'
miRNA:   3'- aCGaGCACGGUG----------GACGGUG----ACUCGCg -5'
11450 5' -58.8 NC_003085.1 + 26370 0.7 0.25774
Target:  5'- cGCagCGgaUGCCguuGCUcggGCCGCUGAGCGCc -3'
miRNA:   3'- aCGa-GC--ACGG---UGGa--CGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 816 0.7 0.264391
Target:  5'- cGUccgCGUGCCGCCgcagGUCGucGAGCGCg -3'
miRNA:   3'- aCGa--GCACGGUGGa---CGGUgaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 16255 0.7 0.27118
Target:  5'- gUGCUgCGccGCCGCCUccaggacgcccGCUACUG-GCGCg -3'
miRNA:   3'- -ACGA-GCa-CGGUGGA-----------CGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 2988 0.69 0.292389
Target:  5'- aGCgcgCGUGggaaCCGCUccCCGCUGGGCGCa -3'
miRNA:   3'- aCGa--GCAC----GGUGGacGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 10257 0.69 0.302721
Target:  5'- cGC-CGUGCCACCuggaaaguacggacgUGUCucaaaGCUGAGCGa -3'
miRNA:   3'- aCGaGCACGGUGG---------------ACGG-----UGACUCGCg -5'
11450 5' -58.8 NC_003085.1 + 26974 0.69 0.307235
Target:  5'- aGCUCG-GCCugCgcaGCCGgCUGGGCu- -3'
miRNA:   3'- aCGAGCaCGGugGa--CGGU-GACUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.