Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11450 | 5' | -58.8 | NC_003085.1 | + | 16255 | 0.7 | 0.27118 |
Target: 5'- gUGCUgCGccGCCGCCUccaggacgcccGCUACUG-GCGCg -3' miRNA: 3'- -ACGA-GCa-CGGUGGA-----------CGGUGACuCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 2988 | 0.69 | 0.292389 |
Target: 5'- aGCgcgCGUGggaaCCGCUccCCGCUGGGCGCa -3' miRNA: 3'- aCGa--GCAC----GGUGGacGGUGACUCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 10257 | 0.69 | 0.302721 |
Target: 5'- cGC-CGUGCCACCuggaaaguacggacgUGUCucaaaGCUGAGCGa -3' miRNA: 3'- aCGaGCACGGUGG---------------ACGG-----UGACUCGCg -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 26974 | 0.69 | 0.307235 |
Target: 5'- aGCUCG-GCCugCgcaGCCGgCUGGGCu- -3' miRNA: 3'- aCGAGCaCGGugGa--CGGU-GACUCGcg -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 5988 | 0.69 | 0.314871 |
Target: 5'- gUGCUUGccaguugGCuCGCCUaCgGCUGGGCGCg -3' miRNA: 3'- -ACGAGCa------CG-GUGGAcGgUGACUCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 3905 | 0.69 | 0.314871 |
Target: 5'- cUGCUCGUGCUGCgacGCCucgaacuggaaGCcGAGCGCc -3' miRNA: 3'- -ACGAGCACGGUGga-CGG-----------UGaCUCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 42366 | 0.69 | 0.322651 |
Target: 5'- cGCUCGcgcaUGCCcUCgGCgGCaUGAGCGCg -3' miRNA: 3'- aCGAGC----ACGGuGGaCGgUG-ACUCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 20413 | 0.67 | 0.39901 |
Target: 5'- gGCUgGUgGCCAaCUGCUGCUGgacGGCGUu -3' miRNA: 3'- aCGAgCA-CGGUgGACGGUGAC---UCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 31481 | 0.68 | 0.372305 |
Target: 5'- aGCUcCGUGCC-CUgcgGCCcgcGCUGccGGCGCu -3' miRNA: 3'- aCGA-GCACGGuGGa--CGG---UGAC--UCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 34091 | 0.68 | 0.363678 |
Target: 5'- cGCUCcUGCauccgcgUCUGCCACUG-GUGCa -3' miRNA: 3'- aCGAGcACGgu-----GGACGGUGACuCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 2541 | 0.68 | 0.363678 |
Target: 5'- cGCgccgaaccUGUGCCGCCUGCCGC--GGUGa -3' miRNA: 3'- aCGa-------GCACGGUGGACGGUGacUCGCg -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 20571 | 0.68 | 0.35519 |
Target: 5'- aUGCUC-UGCUgagacGCCUGCgACUGcugcucggcAGCGCc -3' miRNA: 3'- -ACGAGcACGG-----UGGACGgUGAC---------UCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 40706 | 0.67 | 0.39901 |
Target: 5'- cGcCUCGUuagugacgaGCCGCUUgGCCACgaaGGCGCg -3' miRNA: 3'- aC-GAGCA---------CGGUGGA-CGGUGac-UCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 30175 | 0.67 | 0.40818 |
Target: 5'- aGCUucuugaCGUGCU-CCgGCCugUcGAGCGCu -3' miRNA: 3'- aCGA------GCACGGuGGaCGGugA-CUCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 7091 | 0.67 | 0.436464 |
Target: 5'- cGCUCaUGCCGCCgagGgCAUgcgcGAGCGg -3' miRNA: 3'- aCGAGcACGGUGGa--CgGUGa---CUCGCg -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 6103 | 0.66 | 0.44614 |
Target: 5'- cUGCU--UGCCGCCUacgacGCCGCgaaGGGCGg -3' miRNA: 3'- -ACGAgcACGGUGGA-----CGGUGa--CUCGCg -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 45903 | 0.66 | 0.44614 |
Target: 5'- cGCUUGcGCCcgGCC-GCC-UUGAGCGUg -3' miRNA: 3'- aCGAGCaCGG--UGGaCGGuGACUCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 23412 | 0.66 | 0.455935 |
Target: 5'- cUGCUCGaUGCgCucgcCCUGCUccuucaacuGCUG-GCGCa -3' miRNA: 3'- -ACGAGC-ACG-Gu---GGACGG---------UGACuCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 1515 | 0.66 | 0.456921 |
Target: 5'- cGCUCGggcaagagGCaGCCgaguaccagcgacucGUCACUGAGUGCg -3' miRNA: 3'- aCGAGCa-------CGgUGGa--------------CGGUGACUCGCG- -5' |
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11450 | 5' | -58.8 | NC_003085.1 | + | 30276 | 1.11 | 0.000251 |
Target: 5'- cUGCUCGUGCCACCUGCCACUGAGCGCu -3' miRNA: 3'- -ACGAGCACGGUGGACGGUGACUCGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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