miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 5' -58.8 NC_003085.1 + 14932 0.68 0.338636
Target:  5'- cGCUCGcgGCCGCUgUGUUGCUGA-CGCu -3'
miRNA:   3'- aCGAGCa-CGGUGG-ACGGUGACUcGCG- -5'
11450 5' -58.8 NC_003085.1 + 16255 0.7 0.27118
Target:  5'- gUGCUgCGccGCCGCCUccaggacgcccGCUACUG-GCGCg -3'
miRNA:   3'- -ACGA-GCa-CGGUGGA-----------CGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 20413 0.67 0.39901
Target:  5'- gGCUgGUgGCCAaCUGCUGCUGgacGGCGUu -3'
miRNA:   3'- aCGAgCA-CGGUgGACGGUGAC---UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 20571 0.68 0.35519
Target:  5'- aUGCUC-UGCUgagacGCCUGCgACUGcugcucggcAGCGCc -3'
miRNA:   3'- -ACGAGcACGG-----UGGACGgUGAC---------UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 22207 0.66 0.485989
Target:  5'- gUGCagG-GCgACCUGCUgcgcauccagGCUGAGaCGCa -3'
miRNA:   3'- -ACGagCaCGgUGGACGG----------UGACUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 23334 0.68 0.346843
Target:  5'- cGCUCuggccggccaaGcGCCGCCgGCCGCcGAGgCGCa -3'
miRNA:   3'- aCGAG-----------CaCGGUGGaCGGUGaCUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 23412 0.66 0.455935
Target:  5'- cUGCUCGaUGCgCucgcCCUGCUccuucaacuGCUG-GCGCa -3'
miRNA:   3'- -ACGAGC-ACG-Gu---GGACGG---------UGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 24035 0.68 0.346015
Target:  5'- cGCUCaGUGCUGCUcagccguUGCCGUUGAGgGCc -3'
miRNA:   3'- aCGAG-CACGGUGG-------ACGGUGACUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 26370 0.7 0.25774
Target:  5'- cGCagCGgaUGCCguuGCUcggGCCGCUGAGCGCc -3'
miRNA:   3'- aCGa-GC--ACGG---UGGa--CGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 26974 0.69 0.307235
Target:  5'- aGCUCG-GCCugCgcaGCCGgCUGGGCu- -3'
miRNA:   3'- aCGAGCaCGGugGa--CGGU-GACUCGcg -5'
11450 5' -58.8 NC_003085.1 + 27400 0.74 0.151592
Target:  5'- cGCgcgCGUGgUACCUGcCCGC-GGGCGCa -3'
miRNA:   3'- aCGa--GCACgGUGGAC-GGUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 30175 0.67 0.40818
Target:  5'- aGCUucuugaCGUGCU-CCgGCCugUcGAGCGCu -3'
miRNA:   3'- aCGA------GCACGGuGGaCGGugA-CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 30276 1.11 0.000251
Target:  5'- cUGCUCGUGCCACCUGCCACUGAGCGCu -3'
miRNA:   3'- -ACGAGCACGGUGGACGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 31481 0.68 0.372305
Target:  5'- aGCUcCGUGCC-CUgcgGCCcgcGCUGccGGCGCu -3'
miRNA:   3'- aCGA-GCACGGuGGa--CGG---UGAC--UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 34091 0.68 0.363678
Target:  5'- cGCUCcUGCauccgcgUCUGCCACUG-GUGCa -3'
miRNA:   3'- aCGAGcACGgu-----GGACGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 35130 0.7 0.251226
Target:  5'- gGC-CGUGCCAUugugggccggCUGCCGCaacaUGAGCGg -3'
miRNA:   3'- aCGaGCACGGUG----------GACGGUG----ACUCGCg -5'
11450 5' -58.8 NC_003085.1 + 35805 0.69 0.299741
Target:  5'- gGCacCGUGaacaccguuCCACCUGCuCGCcGAGCGCc -3'
miRNA:   3'- aCGa-GCAC---------GGUGGACG-GUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 36287 0.7 0.251226
Target:  5'- cUGCUgugGUGCCGCUcugagaacuUGCaACUGGGCGCu -3'
miRNA:   3'- -ACGAg--CACGGUGG---------ACGgUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 36630 0.67 0.39901
Target:  5'- aGUUCGcGUCugUcauUGCCugUGAGgGCg -3'
miRNA:   3'- aCGAGCaCGGugG---ACGGugACUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 40125 0.67 0.436464
Target:  5'- cUGCUgGUccugGCCGCCgcGCguCUGAGuCGCu -3'
miRNA:   3'- -ACGAgCA----CGGUGGa-CGguGACUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.