miRNA display CGI


Results 21 - 40 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 5' -58.8 NC_003085.1 + 10476 0.68 0.338636
Target:  5'- -cCUCGgcugGCCgACCUGCUGCgcGGCGCa -3'
miRNA:   3'- acGAGCa---CGG-UGGACGGUGacUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 24035 0.68 0.346015
Target:  5'- cGCUCaGUGCUGCUcagccguUGCCGUUGAGgGCc -3'
miRNA:   3'- aCGAG-CACGGUGG-------ACGGUGACUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 23334 0.68 0.346843
Target:  5'- cGCUCuggccggccaaGcGCCGCCgGCCGCcGAGgCGCa -3'
miRNA:   3'- aCGAG-----------CaCGGUGGaCGGUGaCUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 42249 0.68 0.346843
Target:  5'- gGCUCGcGCUACUccaGCgGCaGGGCGCg -3'
miRNA:   3'- aCGAGCaCGGUGGa--CGgUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 20571 0.68 0.35519
Target:  5'- aUGCUC-UGCUgagacGCCUGCgACUGcugcucggcAGCGCc -3'
miRNA:   3'- -ACGAGcACGG-----UGGACGgUGAC---------UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 2541 0.68 0.363678
Target:  5'- cGCgccgaaccUGUGCCGCCUGCCGC--GGUGa -3'
miRNA:   3'- aCGa-------GCACGGUGGACGGUGacUCGCg -5'
11450 5' -58.8 NC_003085.1 + 34091 0.68 0.363678
Target:  5'- cGCUCcUGCauccgcgUCUGCCACUG-GUGCa -3'
miRNA:   3'- aCGAGcACGgu-----GGACGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 31481 0.68 0.372305
Target:  5'- aGCUcCGUGCC-CUgcgGCCcgcGCUGccGGCGCu -3'
miRNA:   3'- aCGA-GCACGGuGGa--CGG---UGAC--UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 12020 0.68 0.372305
Target:  5'- cGCUg--GCgCACCUGCCGgUGcuGCGCg -3'
miRNA:   3'- aCGAgcaCG-GUGGACGGUgACu-CGCG- -5'
11450 5' -58.8 NC_003085.1 + 678 0.68 0.381071
Target:  5'- cGC-CG-GCCACCUGucCCGCguccggccucGGGCGCg -3'
miRNA:   3'- aCGaGCaCGGUGGAC--GGUGa---------CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 7763 0.67 0.389973
Target:  5'- gGC-CGUGUCAUCaGCCAUcgucgcggcGAGCGCa -3'
miRNA:   3'- aCGaGCACGGUGGaCGGUGa--------CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 40706 0.67 0.39901
Target:  5'- cGcCUCGUuagugacgaGCCGCUUgGCCACgaaGGCGCg -3'
miRNA:   3'- aC-GAGCA---------CGGUGGA-CGGUGac-UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 36630 0.67 0.39901
Target:  5'- aGUUCGcGUCugUcauUGCCugUGAGgGCg -3'
miRNA:   3'- aCGAGCaCGGugG---ACGGugACUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 20413 0.67 0.39901
Target:  5'- gGCUgGUgGCCAaCUGCUGCUGgacGGCGUu -3'
miRNA:   3'- aCGAgCA-CGGUgGACGGUGAC---UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 30175 0.67 0.40818
Target:  5'- aGCUucuugaCGUGCU-CCgGCCugUcGAGCGCu -3'
miRNA:   3'- aCGA------GCACGGuGGaCGGugA-CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 8435 0.67 0.417481
Target:  5'- gUGCUCG-GCCAgcagcagccgucCCUGUCGCucuacaUGAcGCGCc -3'
miRNA:   3'- -ACGAGCaCGGU------------GGACGGUG------ACU-CGCG- -5'
11450 5' -58.8 NC_003085.1 + 41928 0.67 0.424068
Target:  5'- aGCcCGUGCCcacggcauggccccACUUGCCGCcaccGAGaCGCa -3'
miRNA:   3'- aCGaGCACGG--------------UGGACGGUGa---CUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 7091 0.67 0.436464
Target:  5'- cGCUCaUGCCGCCgagGgCAUgcgcGAGCGg -3'
miRNA:   3'- aCGAGcACGGUGGa--CgGUGa---CUCGCg -5'
11450 5' -58.8 NC_003085.1 + 14264 0.67 0.436464
Target:  5'- aGCgagaCGUGCgGCCagGCUGCUGccgucaAGCGCc -3'
miRNA:   3'- aCGa---GCACGgUGGa-CGGUGAC------UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 40125 0.67 0.436464
Target:  5'- cUGCUgGUccugGCCGCCgcGCguCUGAGuCGCu -3'
miRNA:   3'- -ACGAgCA----CGGUGGa-CGguGACUC-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.