miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 5' -58.8 NC_003085.1 + 9860 0.66 0.459885
Target:  5'- cUGCUCGgugcGCUccgcgacgcgcuccaGCUUGCCAgUG-GCGCc -3'
miRNA:   3'- -ACGAGCa---CGG---------------UGGACGGUgACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 12245 0.7 0.251226
Target:  5'- gGCUgG-GCCGCCagaauugaagGCCGCUG-GCGCc -3'
miRNA:   3'- aCGAgCaCGGUGGa---------CGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 12208 0.71 0.232499
Target:  5'- gGUaCGUGUggucugcgaCGCCUGCC-UUGAGCGCg -3'
miRNA:   3'- aCGaGCACG---------GUGGACGGuGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 30276 1.11 0.000251
Target:  5'- cUGCUCGUGCCACCUGCCACUGAGCGCu -3'
miRNA:   3'- -ACGAGCACGGUGGACGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 6103 0.66 0.44614
Target:  5'- cUGCU--UGCCGCCUacgacGCCGCgaaGGGCGg -3'
miRNA:   3'- -ACGAgcACGGUGGA-----CGGUGa--CUCGCg -5'
11450 5' -58.8 NC_003085.1 + 7091 0.67 0.436464
Target:  5'- cGCUCaUGCCGCCgagGgCAUgcgcGAGCGg -3'
miRNA:   3'- aCGAGcACGGUGGa--CgGUGa---CUCGCg -5'
11450 5' -58.8 NC_003085.1 + 40706 0.67 0.39901
Target:  5'- cGcCUCGUuagugacgaGCCGCUUgGCCACgaaGGCGCg -3'
miRNA:   3'- aC-GAGCA---------CGGUGGA-CGGUGac-UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 20413 0.67 0.39901
Target:  5'- gGCUgGUgGCCAaCUGCUGCUGgacGGCGUu -3'
miRNA:   3'- aCGAgCA-CGGUgGACGGUGAC---UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 2541 0.68 0.363678
Target:  5'- cGCgccgaaccUGUGCCGCCUGCCGC--GGUGa -3'
miRNA:   3'- aCGa-------GCACGGUGGACGGUGacUCGCg -5'
11450 5' -58.8 NC_003085.1 + 36287 0.7 0.251226
Target:  5'- cUGCUgugGUGCCGCUcugagaacuUGCaACUGGGCGCu -3'
miRNA:   3'- -ACGAg--CACGGUGG---------ACGgUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 24035 0.68 0.346015
Target:  5'- cGCUCaGUGCUGCUcagccguUGCCGUUGAGgGCc -3'
miRNA:   3'- aCGAG-CACGGUGG-------ACGGUGACUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 34091 0.68 0.363678
Target:  5'- cGCUCcUGCauccgcgUCUGCCACUG-GUGCa -3'
miRNA:   3'- aCGAGcACGgu-----GGACGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 1515 0.66 0.456921
Target:  5'- cGCUCGggcaagagGCaGCCgaguaccagcgacucGUCACUGAGUGCg -3'
miRNA:   3'- aCGAGCa-------CGgUGGa--------------CGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 14932 0.68 0.338636
Target:  5'- cGCUCGcgGCCGCUgUGUUGCUGA-CGCu -3'
miRNA:   3'- aCGAGCa-CGGUGG-ACGGUGACUcGCG- -5'
11450 5' -58.8 NC_003085.1 + 23412 0.66 0.455935
Target:  5'- cUGCUCGaUGCgCucgcCCUGCUccuucaacuGCUG-GCGCa -3'
miRNA:   3'- -ACGAGC-ACG-Gu---GGACGG---------UGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 31481 0.68 0.372305
Target:  5'- aGCUcCGUGCC-CUgcgGCCcgcGCUGccGGCGCu -3'
miRNA:   3'- aCGA-GCACGGuGGa--CGG---UGAC--UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 35805 0.69 0.299741
Target:  5'- gGCacCGUGaacaccguuCCACCUGCuCGCcGAGCGCc -3'
miRNA:   3'- aCGa-GCAC---------GGUGGACG-GUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 45813 0.71 0.238607
Target:  5'- --gUCGUGCCACuccguCUGCCACcGAGCa- -3'
miRNA:   3'- acgAGCACGGUG-----GACGGUGaCUCGcg -5'
11450 5' -58.8 NC_003085.1 + 45903 0.66 0.44614
Target:  5'- cGCUUGcGCCcgGCC-GCC-UUGAGCGUg -3'
miRNA:   3'- aCGAGCaCGG--UGGaCGGuGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 30175 0.67 0.40818
Target:  5'- aGCUucuugaCGUGCU-CCgGCCugUcGAGCGCu -3'
miRNA:   3'- aCGA------GCACGGuGGaCGGugA-CUCGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.