miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11450 5' -58.8 NC_003085.1 + 47884 0.66 0.475864
Target:  5'- aGCgCGUGCgGCCUGCUcuCUGccAGUGUc -3'
miRNA:   3'- aCGaGCACGgUGGACGGu-GAC--UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 46672 0.66 0.455935
Target:  5'- cGCUUc-GCCGCC-GCCug-GAGCGCc -3'
miRNA:   3'- aCGAGcaCGGUGGaCGGugaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 45903 0.66 0.44614
Target:  5'- cGCUUGcGCCcgGCC-GCC-UUGAGCGUg -3'
miRNA:   3'- aCGAGCaCGG--UGGaCGGuGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 45813 0.71 0.238607
Target:  5'- --gUCGUGCCACuccguCUGCCACcGAGCa- -3'
miRNA:   3'- acgAGCACGGUG-----GACGGUGaCUCGcg -5'
11450 5' -58.8 NC_003085.1 + 44810 0.71 0.244849
Target:  5'- gGCUC--GCC-UCUGCCACcggGGGCGCg -3'
miRNA:   3'- aCGAGcaCGGuGGACGGUGa--CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 42366 0.69 0.322651
Target:  5'- cGCUCGcgcaUGCCcUCgGCgGCaUGAGCGCg -3'
miRNA:   3'- aCGAGC----ACGGuGGaCGgUG-ACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 42249 0.68 0.346843
Target:  5'- gGCUCGcGCUACUccaGCgGCaGGGCGCg -3'
miRNA:   3'- aCGAGCaCGGUGGa--CGgUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 41928 0.67 0.424068
Target:  5'- aGCcCGUGCCcacggcauggccccACUUGCCGCcaccGAGaCGCa -3'
miRNA:   3'- aCGaGCACGG--------------UGGACGGUGa---CUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 40706 0.67 0.39901
Target:  5'- cGcCUCGUuagugacgaGCCGCUUgGCCACgaaGGCGCg -3'
miRNA:   3'- aC-GAGCA---------CGGUGGA-CGGUGac-UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 40125 0.67 0.436464
Target:  5'- cUGCUgGUccugGCCGCCgcGCguCUGAGuCGCu -3'
miRNA:   3'- -ACGAgCA----CGGUGGa-CGguGACUC-GCG- -5'
11450 5' -58.8 NC_003085.1 + 36630 0.67 0.39901
Target:  5'- aGUUCGcGUCugUcauUGCCugUGAGgGCg -3'
miRNA:   3'- aCGAGCaCGGugG---ACGGugACUCgCG- -5'
11450 5' -58.8 NC_003085.1 + 36287 0.7 0.251226
Target:  5'- cUGCUgugGUGCCGCUcugagaacuUGCaACUGGGCGCu -3'
miRNA:   3'- -ACGAg--CACGGUGG---------ACGgUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 35805 0.69 0.299741
Target:  5'- gGCacCGUGaacaccguuCCACCUGCuCGCcGAGCGCc -3'
miRNA:   3'- aCGa-GCAC---------GGUGGACG-GUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 35130 0.7 0.251226
Target:  5'- gGC-CGUGCCAUugugggccggCUGCCGCaacaUGAGCGg -3'
miRNA:   3'- aCGaGCACGGUG----------GACGGUG----ACUCGCg -5'
11450 5' -58.8 NC_003085.1 + 34091 0.68 0.363678
Target:  5'- cGCUCcUGCauccgcgUCUGCCACUG-GUGCa -3'
miRNA:   3'- aCGAGcACGgu-----GGACGGUGACuCGCG- -5'
11450 5' -58.8 NC_003085.1 + 31481 0.68 0.372305
Target:  5'- aGCUcCGUGCC-CUgcgGCCcgcGCUGccGGCGCu -3'
miRNA:   3'- aCGA-GCACGGuGGa--CGG---UGAC--UCGCG- -5'
11450 5' -58.8 NC_003085.1 + 30276 1.11 0.000251
Target:  5'- cUGCUCGUGCCACCUGCCACUGAGCGCu -3'
miRNA:   3'- -ACGAGCACGGUGGACGGUGACUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 30175 0.67 0.40818
Target:  5'- aGCUucuugaCGUGCU-CCgGCCugUcGAGCGCu -3'
miRNA:   3'- aCGA------GCACGGuGGaCGGugA-CUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 27400 0.74 0.151592
Target:  5'- cGCgcgCGUGgUACCUGcCCGC-GGGCGCa -3'
miRNA:   3'- aCGa--GCACgGUGGAC-GGUGaCUCGCG- -5'
11450 5' -58.8 NC_003085.1 + 26974 0.69 0.307235
Target:  5'- aGCUCG-GCCugCgcaGCCGgCUGGGCu- -3'
miRNA:   3'- aCGAGCaCGGugGa--CGGU-GACUCGcg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.