miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11454 3' -54.7 NC_003085.1 + 36064 0.66 0.743088
Target:  5'- ------cGUCcaGGUCAUGUCCGUgGCCg -3'
miRNA:   3'- cguacuaCAG--CCGGUACGGGCAgUGG- -5'
11454 3' -54.7 NC_003085.1 + 41894 0.66 0.743088
Target:  5'- aCGUGAUGaaccccUCGGCCGcGCaaggucgaCGUCACa -3'
miRNA:   3'- cGUACUAC------AGCCGGUaCGg-------GCAGUGg -5'
11454 3' -54.7 NC_003085.1 + 48751 0.66 0.743088
Target:  5'- gGCGcgGGUGgaccugcucaGGCCGcGCCCGagGCCg -3'
miRNA:   3'- -CGUa-CUACag--------CCGGUaCGGGCagUGG- -5'
11454 3' -54.7 NC_003085.1 + 40619 0.66 0.743088
Target:  5'- -uGUGcUGaCGGCCGcUGCCguccuCGUCGCCc -3'
miRNA:   3'- cgUACuACaGCCGGU-ACGG-----GCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 4830 0.66 0.732513
Target:  5'- uGCAguggGGUGUCaGUC-UGCCgUGUUACCu -3'
miRNA:   3'- -CGUa---CUACAGcCGGuACGG-GCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 19953 0.66 0.721835
Target:  5'- cGCGU--UGUCuGGcCCAUGgCCG-CGCCa -3'
miRNA:   3'- -CGUAcuACAG-CC-GGUACgGGCaGUGG- -5'
11454 3' -54.7 NC_003085.1 + 10601 0.66 0.711067
Target:  5'- aCAUGAugcUGUC-GCCGcGCgCCGUCGCa -3'
miRNA:   3'- cGUACU---ACAGcCGGUaCG-GGCAGUGg -5'
11454 3' -54.7 NC_003085.1 + 41957 0.66 0.711067
Target:  5'- -gGUGAUGUCcuGCaaccgcucgacgCGgacGCCCGUCACCu -3'
miRNA:   3'- cgUACUACAGc-CG------------GUa--CGGGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 32940 0.66 0.711067
Target:  5'- gGCAaagGGUGUCGGUaGUGCC-GaCACCc -3'
miRNA:   3'- -CGUa--CUACAGCCGgUACGGgCaGUGG- -5'
11454 3' -54.7 NC_003085.1 + 24903 0.67 0.689307
Target:  5'- aCAUGAUgagGUCaGgCAUGUCCG-CGCCg -3'
miRNA:   3'- cGUACUA---CAGcCgGUACGGGCaGUGG- -5'
11454 3' -54.7 NC_003085.1 + 28694 0.67 0.689307
Target:  5'- aGCG-GAUG-CGGCaCA-GCCCGaaGCCg -3'
miRNA:   3'- -CGUaCUACaGCCG-GUaCGGGCagUGG- -5'
11454 3' -54.7 NC_003085.1 + 38398 0.67 0.678337
Target:  5'- uGCAggccGAgGUUGGUgGUguaGCCCGUCACa -3'
miRNA:   3'- -CGUa---CUaCAGCCGgUA---CGGGCAGUGg -5'
11454 3' -54.7 NC_003085.1 + 27527 0.67 0.678337
Target:  5'- uGCAUGAaGcUGGCgAUGCCgGacagCACCu -3'
miRNA:   3'- -CGUACUaCaGCCGgUACGGgCa---GUGG- -5'
11454 3' -54.7 NC_003085.1 + 22138 0.67 0.678337
Target:  5'- ---cGAUGUUGGCCGgguugacCCCGUCgauuucACCg -3'
miRNA:   3'- cguaCUACAGCCGGUac-----GGGCAG------UGG- -5'
11454 3' -54.7 NC_003085.1 + 8225 0.67 0.667324
Target:  5'- cGCGUGGcguUGUagaGGCC--GCaCGUCACCg -3'
miRNA:   3'- -CGUACU---ACAg--CCGGuaCGgGCAGUGG- -5'
11454 3' -54.7 NC_003085.1 + 8612 0.67 0.667324
Target:  5'- cGC-UGGccuccagGUUGGCCA-GCCCGgcCGCCg -3'
miRNA:   3'- -CGuACUa------CAGCCGGUaCGGGCa-GUGG- -5'
11454 3' -54.7 NC_003085.1 + 41375 0.67 0.667324
Target:  5'- gGCGUGAUGUUGcGCUccGCUCaugUACCg -3'
miRNA:   3'- -CGUACUACAGC-CGGuaCGGGca-GUGG- -5'
11454 3' -54.7 NC_003085.1 + 47075 0.67 0.660699
Target:  5'- -gGUGuccAUGUCGGCCAcgacgUcaaacucguauucgaGCCCGUCGCg -3'
miRNA:   3'- cgUAC---UACAGCCGGU-----A---------------CGGGCAGUGg -5'
11454 3' -54.7 NC_003085.1 + 13855 0.67 0.656276
Target:  5'- uGCcgGAUGUgCGGCaacccgcGCCCGgcaaGCCg -3'
miRNA:   3'- -CGuaCUACA-GCCGgua----CGGGCag--UGG- -5'
11454 3' -54.7 NC_003085.1 + 38988 0.67 0.645206
Target:  5'- cGCAgcagGUCGGCCA-GCCgaGgggCGCCa -3'
miRNA:   3'- -CGUacuaCAGCCGGUaCGGg-Ca--GUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.