miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11455 3' -61 NC_003085.1 + 42739 0.66 0.424382
Target:  5'- uCGGGGCGAuGCGGGCgcgguggacggcaucCAUCgccgCGUCg- -3'
miRNA:   3'- -GCUCCGCUuCGCCCG---------------GUGGa---GCAGga -5'
11455 3' -61 NC_003085.1 + 43836 0.66 0.420708
Target:  5'- uGAGGuCGcgcAGGCGGGCguUCUCcUCCUc -3'
miRNA:   3'- gCUCC-GC---UUCGCCCGguGGAGcAGGA- -5'
11455 3' -61 NC_003085.1 + 20286 0.66 0.420708
Target:  5'- uGAGGCGAAGCccaaGGCCguGCCcaacgCGcCCg -3'
miRNA:   3'- gCUCCGCUUCGc---CCGG--UGGa----GCaGGa -5'
11455 3' -61 NC_003085.1 + 30365 0.66 0.420708
Target:  5'- uGAcaGCGAAGCGGGUgcggcgCACUcCGUCCg -3'
miRNA:   3'- gCUc-CGCUUCGCCCG------GUGGaGCAGGa -5'
11455 3' -61 NC_003085.1 + 47155 0.66 0.411611
Target:  5'- cCGGuGGCGAGGCaGGCCAgCgcCGUgCUg -3'
miRNA:   3'- -GCU-CCGCUUCGcCCGGUgGa-GCAgGA- -5'
11455 3' -61 NC_003085.1 + 2650 0.66 0.402636
Target:  5'- gCGAGGUGAugccgcccaaGGaCGuGGCCACCgucaUCGUCg- -3'
miRNA:   3'- -GCUCCGCU----------UC-GC-CCGGUGG----AGCAGga -5'
11455 3' -61 NC_003085.1 + 17518 0.66 0.401745
Target:  5'- cCGAGGaccuguccggugaUGAAGgcacCGGGCUgcugcucccguGCCUCGUCCg -3'
miRNA:   3'- -GCUCC-------------GCUUC----GCCCGG-----------UGGAGCAGGa -5'
11455 3' -61 NC_003085.1 + 28185 0.66 0.401745
Target:  5'- -cAGGaCGAAGUcuGGGCgcggcacCACCUUGUCCg -3'
miRNA:   3'- gcUCC-GCUUCG--CCCG-------GUGGAGCAGGa -5'
11455 3' -61 NC_003085.1 + 47657 0.66 0.399968
Target:  5'- gGGGGCGcaccAGUcccggccagccaacGGGCCACCU-GUCCc -3'
miRNA:   3'- gCUCCGCu---UCG--------------CCCGGUGGAgCAGGa -5'
11455 3' -61 NC_003085.1 + 35071 0.66 0.385064
Target:  5'- uGGGGCccuAGCGGGUCugccCCUCaUCCg -3'
miRNA:   3'- gCUCCGcu-UCGCCCGGu---GGAGcAGGa -5'
11455 3' -61 NC_003085.1 + 23680 0.66 0.385064
Target:  5'- -cAGGCGuccacgcAGCGGGCCcgcgcagcaGCCUCcUCCg -3'
miRNA:   3'- gcUCCGCu------UCGCCCGG---------UGGAGcAGGa -5'
11455 3' -61 NC_003085.1 + 34187 0.66 0.37647
Target:  5'- aCGcGGGCGcGGCGGGUgAgCUCGgCCg -3'
miRNA:   3'- -GC-UCCGCuUCGCCCGgUgGAGCaGGa -5'
11455 3' -61 NC_003085.1 + 1638 0.67 0.368006
Target:  5'- gGAGGCGuAGUcauGGCCugC-CGUCCc -3'
miRNA:   3'- gCUCCGCuUCGc--CCGGugGaGCAGGa -5'
11455 3' -61 NC_003085.1 + 49096 0.67 0.358024
Target:  5'- cCGAGGaGggGCcccucgugcugacgGGGCCccggugcucagucguCCUCGUCCUc -3'
miRNA:   3'- -GCUCCgCuuCG--------------CCCGGu--------------GGAGCAGGA- -5'
11455 3' -61 NC_003085.1 + 47374 0.67 0.351475
Target:  5'- cCGAGGUGcGGC-GGCUGCgCUCGUCg- -3'
miRNA:   3'- -GCUCCGCuUCGcCCGGUG-GAGCAGga -5'
11455 3' -61 NC_003085.1 + 9153 0.67 0.351475
Target:  5'- --uGGCGGAGCucGCCGCCgcgcaGUCCUg -3'
miRNA:   3'- gcuCCGCUUCGccCGGUGGag---CAGGA- -5'
11455 3' -61 NC_003085.1 + 48447 0.67 0.351475
Target:  5'- gCGAGGCcgcGAGCauaGGCCACCUCaG-CCUu -3'
miRNA:   3'- -GCUCCGc--UUCGc--CCGGUGGAG-CaGGA- -5'
11455 3' -61 NC_003085.1 + 31735 0.67 0.343409
Target:  5'- aCGAgauuGGCGGAcucauCGGGCgCACCuUCGUCCc -3'
miRNA:   3'- -GCU----CCGCUUc----GCCCG-GUGG-AGCAGGa -5'
11455 3' -61 NC_003085.1 + 19881 0.67 0.343409
Target:  5'- aGAGGCGAcauucaUGaGGCCGCCgaagaCGUCCg -3'
miRNA:   3'- gCUCCGCUuc----GC-CCGGUGGa----GCAGGa -5'
11455 3' -61 NC_003085.1 + 33643 0.67 0.327681
Target:  5'- -cAGGCGAAGaGGGCCACggCGgCCa -3'
miRNA:   3'- gcUCCGCUUCgCCCGGUGgaGCaGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.